Phyre 2 alignment of P0AFK9 with c3ombA

Job Description P0AFK9
Confidence 99.94% Date Thu Jan 5 11:26:37 GMT 2012

Rank 62 Aligned Residues 266

% Identity 16% Template c3ombA_

PDB info PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: crystal structure of extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis

Resolution 2.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	23	.	.	.	.	.	.	30	.	.	.	.						.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.																																			.
Query SS confidence													.	.	.	.	.																																			.
Query Sequence	A	D	D	N	N	T	L	Y	F	Y	N	W	.	.	.	.	.	T	E	Y	V	P	P	G	L	L	E	Q	F	T	K	E	T	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	.	L	K	T	Y	K	D	G	A	Y	D	L	V	V	P	S	T	Y	Y	V	D	K	M	R	K	E	G	M	I
Query Conservation													.	.	.	.	.																																			.
Alig confidence													.	.	.	.	.																																			.
Template Conservation
Template Sequence	A	D	G	K	P	I	V	T	V	L	V	K	K	N	A	N	Q	E	K	X	A	N	X	Q	W	A	K	D	L	E	A	D	C	D	C	K	I	E	W	Q	E	V	T	R	E	A	W	A	Q	Q	K	N	A	T	L	A	S	G	D	I	A	D	V	N	L	N	G	Y	G	A	V	E	A	Y	Q	Y	P	G	X	F
Template Known Secondary structure	T	T			B										T	T	B			G	G	G												T	S																							T				S				S	S			T						S	T	T	S	B
Template Predicted Secondary structure
Template SS confidence
	35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.

	97	.	.	100	.	.	.	.	.	.	.							.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.							.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure												.	.	.	.	.	.																											.	.	.	.	.	.																														.	.
Query SS confidence												.	.	.	.	.	.																											.	.	.	.	.	.																														.	.
Query Sequence	Q	K	I	D	K	S	K	L	T	N	F	.	.	.	.	.	.	S	N	L	D	P	D	M	L	N	K	P	F	D	P	N	N	D	Y	S	I	P	Y	I	W	G	A	.	.	.	.	.	.	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	T	S	W	A	D	L	W	K	P	E	Y	K	G	S	.	.
Query Conservation												.	.	.	.	.	.																											.	.	.	.	.	.																														.	.
Alig confidence												.	.	.	.	.	.																											.	.	.	.	.	.																														.	.
Template Conservation
Template Sequence	E	D	L	S	K	D	L	D	K	L	P	N	V	K	A	F	F	K	Q	K	P	D	A	K	K	X	S	T	D	S	K	G	R	I	Y	A	I	A	D	G	R	G	K	A	Y	S	G	T	G	Q	H	X	L	I	N	K	A	W	L	D	K	L	G	L	Q	V	P	T	T	W	D	E	L	E	N	V	L	K	A	F
Template Known Secondary structure			G	G	G	G	G	G	G																					T	T	S			S	S							G	G	G		S		S														T						B
Template Predicted Secondary structure
Template SS confidence
	115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.

																																								163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	L	T	D	D	A	R	E	V	F	Q	M	A	L	R	K	L	G	Y	S	G	N	T	T	D	P	K	E	I	E	A	A	Y	N	E	L	K	K	L	M
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	K	T	Q	D	P	N	G	N	G	Q	A	D	E	I	P	X	N	I	K	K	L	E	G	S	Y	F	T	W	Y	S	P	X	L	L	L	N	S	T	G	I	V	T	G	F	N	K	G	V	S	E	Y	G	F	Y	A	K	N	G	V	V	K	S	F	L	T	S	D	E	Y	K	E	V	I	K	Y	Y	H	K	L	I
Template Known Secondary structure			S		T	T		S	S	S	S												S	S	S			T	T		G	G	G	G	G	G	G	G	T					T	T	S	S	G	G	G	G	T					T	T					G	G	G	S
Template Predicted Secondary structure
Template SS confidence
	195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

	204	.	.	.							.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.																.	.	.	.	.	.	260
Predicted Secondary structure					.	.	.	.	.	.																		.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.																		.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	P	N	V	A	.	.	.	.	.	.	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	.	.	L	G	M	I	W	N	G	S	A	F	V	A	R	Q	A	G	T	P	I	D	V	V	W	P	K	E	G	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	W	M	D	S	L	A
Query Conservation					.	.	.	.	.	.																		.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.																		.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	S	E	G	L	I	P	A	E	W	A	T	K	D	D	D	A	Y	N	A	D	Q	I	S	D	G	K	T	A	K	T	G	V	V	F	G	W	S	P	S	D	N	F	G	K	L	K	D	Q	Y	I	A	X	P	V	P	S	A	P	G	V	S	P	D	Q	T	V	W	D	G	S	S	S	E	L	S	P	A	G	L	S
Template Known Secondary structure		T	T	S	S		T	T	G	G	G												T	T	S	S	S									S							G	G	G	G	G	G								B		T	T			G	G	G								S	S
Template Predicted Secondary structure
Template SS confidence
	275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

	261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	P	A	N	A	K	N	K	E	G	A	L	K	L	I	N	F	L	L	R	P	D	V	A	K	Q	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	I	S	S	H	A	A	N	K	D	A	A	L	K	L	A	N	L	L	Y	S	E	K	Y	S	V	Q	Q	F
Template Known Secondary structure		B	T	T		T	T												T	S
Template Predicted Secondary structure
Template SS confidence
	355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions