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Job DescriptionP0AFK9
Confidence100.00%DateThu Jan 5 11:26:37 GMT 2012
Rank12Aligned Residues319
% Identity17%Templatec3mp6A_
PDB info PDB header:histone binding proteinChain: A: PDB Molecule:maltose-binding periplasmic protein, linker, saga- PDBTitle: complex structure of sgf29 and dimethylated h3k4
Resolution1.48 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30......... 40.........50.........60.........70.........80.........90.........
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Query Sequence  ADDNNTLYFYNWTEYVP. . . PGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKI
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Template Sequence  KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDG. PDIIFWAHDRFGGYAQSGLLAEI
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TTTTS

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TTTT
S.
SGGGTT
B


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   739740.........750.........760.........770.........780.........790.... .....800.........810.......
 
   100.........110.........120.........130.........140.........150.... .....160.........170....
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Query Sequence  DKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADL. . . . . WKPEYKGSLLLTDDAREVFQ
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Template Sequence  TPD. KAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTW
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.TB
TTT
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TTT
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SBGGGTTT



SSSGGGT
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   818.820 .........830.........840.........850.........860.........870.........880.........890......
 
   175....180...... ...190.........200...... ...210.........220.........230.........
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Query Sequence  MALRKLGYSGNT. . . . . . . . . . . . TDPKEIEAAYNELKKLMPNV. . . AAFNSDNPANPYMEGEVNLGMIWNGSAFVARQA
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Template Sequence  PLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTS
Template Known Secondary structure  TT
TTTTSTTSS
TT

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   897..900.........910.........920.........930.........940.........950.........960.........970......
 
   240......... 250.........260.........270...... ...280.........290.........300.........310..
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Query Sequence  GTPIDVVWPK. . . . . . EGGIFWMDSLAIPANAKNKEGALKLIN. FLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDK
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Template Sequence  KVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYE. . . EELAKDP
Template Known Secondary structure  S




BBTTB



BTT
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   977..980.........990.........1000.........1010.........1020.........1030.........1040...... ...1050...
 
   313......320.........330.........340......
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Query Sequence  TLYPDAETIKNGEWQNDVGAASSIYEEYYQKLKA
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Template Sequence  RIAATMENAQKGEIMPNIPQMSAFWYAVRTAVIN
Template Known Secondary structure  S


STT
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   1054.....1060.........1070.........1080.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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