Job Description P0AFK9 Confidence 99.50% Date Thu Jan 5 11:26:37 GMT 2012 Rank 76 Aligned Residues 212 % Identity 15% Template c3kn3C_ PDB info PDB header:transcription Chain: C: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of lysr substrate binding domain (25-263) of2 putative periplasmic protein from wolinella succinogenes Resolution 2.41 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	L	L	E	Q	F	T	K	E	T	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	L	K	T	Y	K	D	G	A	Y	D	L	V	V	P	S	T	Y	Y	V	D	K	M	R	K	E	G	M	I	Q	K	I	D	K	S	K	L	T	N	F	S	N	L	D	P	D	M	L	N	K	P	F
Query Conservation
Alig confidence																																.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	L	A	P	A	Y	K	K	D	T	G	V	D	L	K	W	V	A	V	G	T	G	N	A	L	K	L	G	E	.	.	.	.	N	C	D	V	D	V	V	F	V	H	A	P	K	V	E	L	E	Y	V	E	K	G	F	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																																.	.	.	.	T	T			S					S											T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.					.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		D	P	N	N	D	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	T	S	W	A	D	L	W	K	P	E	Y	K	G	S	L	.	L	L	T	D	D	A	R	E	V	F	Q	M	A	L	R	K	L	G	Y	S	G	N	T	T	D	P	K	E	I	E	A	A	Y	N	E
Query Conservation																																														.
Alig confidence		.	.	.	.	.																																								.																												.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																																																				.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	D	R	T	P	V	X	Y	N	D	F	V	I	I	G	N	P	S	F	K	Q	K	F	T	G	X	S	V	A	E	A	F	K	L	I	E	K	E	Q	V	K	F	V	S	R	G	D	K	S	G	T	H	S	K	E	R	E	V	W	K	E	A	L	G	K	I	P	E	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.																G	G	G	T	T	T	T	T	T													T	T								S	S	S															S	S			T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.																																																																				.	.	.	.	.	.	.	.
Template SS confidence
							74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.					.	.	.	.	270	.	.
Predicted Secondary structure																																											.	.																											.	.	.	.
Query SS confidence																																											.	.																											.	.	.	.
Query Sequence		L	K	K	L	M	P	N	V	A	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G	S	A	F	V	A	R	Q	A	.	.	G	T	P	I	D	V	V	W	P	K	E	G	G	I	F	W	M	D	S	L	A	I	P	A	N	A	.	.	.	.	K	N	K	E	G	A	L
Query Conservation																																											.	.																											.	.	.	.
Alig confidence		.																																									.	.																											.	.	.	.
Template Conservation		.
Template Sequence		.	K	E	S	W	Y	I	E	A	G	Q	G	X	L	A	T	I	N	I	A	E	E	Q	K	G	L	T	L	T	D	R	G	T	F	I	K	Y	E	S	N	H	K	G	K	P	P	X	V	I	V	L	E	G	D	N	T	L	K	N	F	Y	S	I	X	A	V	N	P	K	R	C	E	K	A	D	Y	K	G	A	K
Template Known Secondary structure		.	T		T	T						S												T	T		B														T	S		S	S		S									G	G	G											T	T	T		T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	I	N	F	L	L	R	P	D	V	A	K	Q	V	A	E	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	F	I	D	W	I	V	S	E	K	X	Q	A	E	I	A	N	F
Template Known Secondary structure								T	S
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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