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Job DescriptionP0AFK9
Confidence100.00%DateThu Jan 5 11:26:37 GMT 2012
Rank58Aligned Residues325
% Identity12%Templatec3i3vC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:probable secreted solute-binding lipoprotein; PDBTitle: crystal structure of probable secreted solute-binding2 lipoprotein from streptomyces coelicolor
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.... .....40.........50 .........60.........70.........80.... .....90.....
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Query Sequence  DDNNTLYFYNW. . . . . . TEYVPPGLLEQFTKET. GIKVIYSTYESNETMYAKLKTYKDGAYDLVVPST. YYVDKMRKEGM
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Template Sequence  SDPDTLVVHTQLGTTAPGSPTYLAAVDRFREENPGVKIKNLVNGDDLAQVYETSRLARKEADVVXVNLYDKTLAWTDVGA
Template Known Secondary structure 
STTS
SSSSTT
TT

STTTT


S

STTGGGTS
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   37..40.........50.........60.........70.........80.........90.........100.........110......
 
   96...100...... ...110.........120.........130.........140.........150....... ..160....
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Query Sequence  IQKIDKSKLTN. . . FSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKP. . . . . . . . EYKGSLL
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Template Sequence  TVDVKPYLDDWGLRGRVLPAALADWTDDEGRVRAFPYFATNWPVAYNRALLDRAGVDAIPTTGDQLIAAARKLRAKGIAP
Template Known Secondary structure  S


GGG
TTSB
TB
TTS
B
SB


T

S


BTT
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   117..120.........130.........140.........150.........160.........170.........180.........190......
 
   165....170.........180...... ...190.........200...... ...210.........220.....
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Query Sequence  LTDDAREVFQMALRKLGYSGNT. . . . . . . . . . . . . TDPKEIEAAYNELKKLMPNV. . . . . . AAFNSDNPANPYMEGEVNL
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Template Conservation                                             
      
   
                 
  
  
 
Template Sequence  VTVGGNDWTGQKLLAQIIQTFLSQDEARHVYSTGDFGVRGARLGIEYFAHLRDAGVFADKAQGLTSDSXTTQFNTEEAAV
Template Known Secondary structure 

TTSGGG

T
TTSTT
B
TTGGG

TTS
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   197..200.........210.........220.........230.........240.........250.........260.........270......
 
   226...230.........240.........250 .........260...... ...270.........280.........290..
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Query Sequence  GMIWNGSAFVARQAGTPIDVVWPKE. . . . . . . . . . . . GGIFWMDSLAIPANAK. NKEGALKLINFLLRPDVAKQVAETIG
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Template Sequence  QSAXSSALAKVPEKVAGHTEVGGWPLADGAAHDGPTVIRAYTLIGFWISPNGVRKIEQVEKFLRFXYRPDVVARFVTESG
Template Known Secondary structure 

TTS
T
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B
TT
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TTS
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   277..280.........290.........300.........310.........320.........330.........340.........350......
 
   293......300.........310.........320.........330.........340........
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Query Sequence  YPTPNLAARKLLSPEVANDKTLYPDAETIKNGEWQNDVGAASSIYEEYYQKLKAGR
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Template Conservation                                                        
 
Template Sequence  RDXALRTDAVSTGFPLVGAAQRLGSEVSQVLLPDVYVPPAAAQPLITATSTSFTRG
Template Known Secondary structure 
SB

S


TTST

TTS

GGGTS
STT
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   357..360.........370.........380.........390.........400.........410..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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