Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFK9
Confidence100.00%DateThu Jan 5 11:26:37 GMT 2012
Rank5Aligned Residues318
% Identity18%Templatec3h4zC_
PDB info PDB header:allergenChain: C: PDB Molecule:maltose-binding periplasmic protein fused with allergen PDBTitle: crystal structure of an mbp-der p 7 fusion protein
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30......... 40.........50.........60.........70.........80.........90.........100.
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Query Sequence  DNNTLYFYNWTEYVP. . . PGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDK
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Template Sequence  EEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDG. PDIIFWAHDRFGGYAQSGLLAEITP
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SSTTTT
S.
SGGGTT
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   3......10.........20.........30.........40.........50...... ...60.........70.........80.
 
   102.......110.........120.........130.........140.........150...... ...160.........170.....
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Query Sequence  SKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWK. . . . . . PEYKGSLLLTDDAREVFQM
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Template Sequence  A. AAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN. PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWP
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.B
TBSSSSB
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TTTSSS.

SBSTTTTT




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   82 .......90.........100.........110.........120.... .....130.........140.........150.........
 
   176...180...... ...190.........200......... 210.........220.........230.........240
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Query Sequence  ALRKLGYSGNT. . . . . . . . . . . . TDPKEIEAAYNELKKLMPNVAAF. . . NSDNPANPYMEGEVNLGMIWNGSAFVARQAG
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Template Sequence  LIAADGGYAFKYAAGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSA
Template Known Secondary structure  GGGT

SSSSSSTTSS
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   160.........170.........180.........190.........200.........210.........220.........230.........
 
   241........ 250.........260.........270...... ...280.........290.........300.........310...
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Query Sequence  TPIDVVWPK. . . . . . EGGIFWMDSLAIPANAKNKEGALKLIN. FLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKT
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Template Sequence  VNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYE. . . EELAKDPR
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   240.........250.........260.........270.........280.........290.........300........ .310......
 
   314.....320.........330........ .340........
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Query Sequence  LYPDAETIKNGEWQNDVGAASSIYE. . . EYYQKLKAGR
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Template Sequence  IAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGR
Template Known Secondary structure  S


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   317..320.........330.........340.........350....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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