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Job DescriptionP0AFK9
Confidence87.96%DateThu Jan 5 11:26:37 GMT 2012
Rank91Aligned Residues203
% Identity15%Templatec3e4rA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes
Resolution2.01 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40..... ....50 .........60.........70.........80.........90........
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Query Sequence  ADDNNTLYFYNWTEYVPPGLLEQ. . . FTKET. GIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQK
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Template Sequence  AAEPAQLRIGYQKAVSSLVLAKQHRLLEQRFPRTKITWVEFPAGPQLLEALNVGSI. . . DLGGAGDIPPLFAQAAGADLL
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   25....30.........40.........50.........60.........70.........80 .........90.........100.
 
   99100.........110.........120.........130.........140.........150.........160.........170........
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Query Sequence  IDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALR
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Template Sequence  Y. . . . . . . . . . . . . . . . . . . . . . . . VGWVPPTPKAETILVPSK. . . . SALRTVADL. . . . . KGKRIAFQKGSSAHNLLLR
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GGGTT....



SGGGG.....TT

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   102 .......110.........120 ......... 130.........140........
 
   179180.........190.........200.........210.........220.........230.........240.........250........
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Query Sequence  KLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDS
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Template Sequence  VL. . . . . . . . . . . . . . AKSGLSMRDITPLYLSPANARAAFAAGQVDAWAIWDPWYSALTLDGS. ARLLANGEGLGLTGGF
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   149150 .........160.........170.........180.........190....... ..200.........210...
 
   259260.... .....270......
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Query Sequence  LAIPAN. . AKNKEGALKLIN
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Template Sequence  FLSSRRYATAWGPFVQQVMG
Template Known Secondary structure  T
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   214.....220.........230...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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