Job Description P0AFK9 Confidence 99.89% Date Thu Jan 5 11:26:37 GMT 2012 Rank 69 Aligned Residues 280 % Identity 11% Template c3cg3A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein ph0151; PDBTitle: crystal structure of p. horikoshii periplasmic binding2 protein moda/wtpa with bound tungstate Resolution 1.80 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.							.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.																																															.
Query SS confidence															.	.	.	.	.	.																																															.
Query Sequence		D	D	N	N	T	L	Y	F	Y	N	W	T	E	.	.	.	.	.	.	Y	V	P	P	G	L	L	E	Q	F	T	K	E	T	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	L	K	T	Y	K	D	G	A	Y	D	L	V	V	P	.	S	T	Y	Y	V	D	K	M	R	K	E	G	M	I
Query Conservation															.	.	.	.	.	.																																															.
Alig confidence															.	.	.	.	.	.																																															.
Template Conservation
Template Sequence		S	R	E	A	R	L	I	I	F	H	A	G	S	L	S	I	P	L	S	Q	V	E	E	K	F	T	K	Y	A	Q	E	K	L	G	V	K	V	T	F	Q	D	E	A	S	G	S	V	K	A	V	R	K	V	T	D	L	K	K	R	A	D	I	V	A	V	A	D	Y	T	L	I	P	Q	L	M	I	P	N	Y	T
Template Known Secondary structure													G	G	G																																									T	S					S					S	S	T	T						T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		97	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.															.	.	160
Predicted Secondary structure							.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	K	I	D	K	.	.	S	K	L	T	N	F	S	N	L	D	P	D	M	L	N	K	P	F	D	P	N	N	D	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	T	S	W	A	D	L	W	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	K
Query Conservation							.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	Y	V	L	F	A	T	N	E	I	V	I	A	F	T	N	K	S	K	Y	A	D	E	M	L	K	N	P	D	K	W	Y	E	I	L	S	R	P	D	V	S	F	G	F	S	D	P	N	Q	D	P	C	G	Y	R	S	V	M	V	M	K	L	A	E	L	Y	Y	G	R	P	I	F	K	E	L	V	E	K	T
Template Known Secondary structure		S																T	T	S	T	T								G	G	G					T	T		T	T								T	T	T																				S							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	L	L	L	T	D	D	A	R	E	V	F	Q	M	A	L	R	K	L	G	Y	S	G	N	T	T	D	P	K	E	I	E	A	A	Y	N	E	L	K	K	L	M	P	N	V	A	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G	S	A	F	V	A	R	Q	A	G
Query Conservation
Alig confidence																																.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.
Template Sequence		T	N	I	Y	S	N	G	T	R	I	Y	A	P	K	E	I	I	I	K	D	K	R	V	I	M	R	P	K	E	T	.	.	.	.	.	.	D	L	V	G	L	V	E	S	G	S	L	D	Y	I	F	I	Y	K	S	V	A	K	Q	H	H	L	S	Y	I	T	L	P	D	D	I	N	L	G	D	F	N	K	A	D
Template Known Secondary structure		B	S					T	T						S	S			B	S	S	T	T					S	S	T		.	.	.	.	.	.								T	T	S	S													T	T								T	T	T	S	S			G	G	G
Template Predicted Secondary structure																																.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.							.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.							.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure										.	.	.	.	.	.																																																				.
Query SS confidence										.	.	.	.	.	.																																																				.
Query Sequence		T	P	I	D	V	V	W	P	.	.	.	.	.	.	K	E	G	G	I	F	W	M	D	S	L	A	I	P	A	N	A	K	N	K	E	G	A	L	K	L	I	N	F	L	L	R	P	D	V	A	K	Q	V	A	E	T	I	G	Y	P	T	P	N	L	A	.	A	R	K	L	L	S	P	E	V	A	N
Query Conservation										.	.	.	.	.	.																																																				.
Alig confidence										.	.	.	.	.	.																																											.									.
Template Conservation																																																										.
Template Sequence		F	Y	G	R	V	S	I	T	L	G	S	T	G	K	T	I	K	A	K	P	I	V	Y	G	I	T	V	L	K	N	A	P	N	R	E	L	A	I	E	F	L	R	F	L	L	G	N	E	G	R	K	I	F	E	D	N	.	Y	Q	E	F	L	S	P	P	V	A	F	G	N	V	P	P	E	I	R	R
Template Known Secondary structure				T	T						T	T	T																	T	T		T	T													S										T	.	T												S			G	G	G	T	T
Template Predicted Secondary structure																																																										.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions