Job Description P0AFK9 Confidence 99.87% Date Thu Jan 5 11:26:37 GMT 2012 Rank 70 Aligned Residues 264 % Identity 10% Template c3cg1A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein pf0080; PDBTitle: crystal structure of p. furiosus periplasmic binding protein2 moda/wtpa with bound tungstate Resolution 1.60 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.												.	.	.	.																																	.
Query SS confidence																.	.												.	.	.	.																																	.
Query Sequence		N	N	T	L	Y	F	Y	N	W	T	E	Y	V	P	.	.	P	G	L	L	E	Q	F	T	K	E	T	.	.	.	.	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	L	K	T	Y	K	D	G	A	Y	D	L	V	V	P	.	S	T	Y	Y	V	D	K	M	R	K	E	G	M	I	Q	K
Query Conservation																.	.												.	.	.	.																																	.
Alig confidence																.	.												.	.	.	.																																	.
Template Conservation
Template Sequence		E	V	T	L	I	V	F	H	A	G	S	L	S	V	P	F	Q	E	V	E	K	E	F	S	E	Y	A	E	R	N	L	G	I	K	V	S	F	Q	D	E	A	S	G	S	V	M	A	V	R	K	V	T	D	L	G	R	K	A	D	V	I	G	V	A	D	Y	T	L	I	P	Q	L	L	I	P	N	Y	T	D	F
Template Known Secondary structure											G	G	G																				S																					T	S					S					S	S	T	T						T	T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	K	S	K	L	T	N	F	S	N	L	D	P	D	M	L	N	K	P	F	D	P	N	N	D	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	T	S	W	A	D	L	W	K	P	E	Y	K	G	S	L	L	L	T	D	D	A	R	E	V	F	Q	M	A	L	R
Query Conservation
Alig confidence																.	.	.
Template Conservation																.	.	.
Template Sequence		Y	V	L	F	A	T	N	E	I	V	I	A	F	T	.	.	.	D	K	S	R	Y	V	E	E	M	K	S	N	P	D	K	W	Y	E	I	L	A	R	E	D	V	R	F	G	F	S	D	P	N	Q	D	P	C	G	Y	R	S	L	M	V	I	K	L	A	D	L	Y	Y	G	K	E	I	F	K	E	L	I	E	E
Template Known Secondary structure																.	.	.	T	T	S	T	T								G	G	G						T	S	T	T								T	T	T																			T	S							T	T	T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.														.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	G	Y	S	G	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	P	K	E	I	E	A	A	Y	N	E	L	K	K	L	M	P	N	V	A	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G	S	A	F	V	A	R	Q	A	G	T	P	I	D	V
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	T	N	I	Y	S	N	G	T	Q	I	Y	A	P	K	E	I	T	V	N	P	G	K	I	V	I	R	P	K	E	T	D	L	L	G	L	V	E	S	G	S	I	D	Y	I	F	I	Y	K	S	V	A	K	Q	H	N	L	S	Y	I	T	L	P	S	E	I	N	L	G	D	F	S	K	E	K	F	Y	G	Q	I
Template Known Secondary structure		T	B	S					T	T						S	S			B		T	T	T					S	S	G	G	G	G							T	S	S	S												T	T								T	T	T	S	S			G	G	G					T	T
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		246	.	.							.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure					.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.
Query Sequence		V	W	P	.	.	.	.	.	.	K	E	G	G	I	F	W	M	D	S	L	A	I	P	A	N	A	K	N	K	E	G	A	L	K	L	I	N	F	L	L	R	P	D	V	A	K	Q	V	A	E	T	I	G
Query Conservation					.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.
Template Conservation
Template Sequence		S	I	T	L	G	S	T	G	K	T	I	K	A	K	P	I	V	Y	G	V	T	V	L	K	D	A	P	N	R	E	V	A	I	E	F	L	R	Y	L	L	S	E	N	G	K	R	I	F	E	K	N	H	Q
Template Known Secondary structure						T	T	T																	T	T		T	T													S										T	T
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions