Job Description P0AFK9 Confidence 100.00% Date Thu Jan 5 11:26:37 GMT 2012 Rank 52 Aligned Residues 275 % Identity 17% Template c3c9hB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																.												.																					.	.	.
Query SS confidence																																.												.																					.	.	.
Query Sequence		A	A	G	A	L	A	L	G	M	S	A	A	H	A	D	D	N	N	T	L	Y	F	Y	N	W	T	E	Y	V	P	.	P	G	L	L	E	Q	F	T	K	E	T	.	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	L	K	.	.	.	T	Y	K	D	G	A	Y	D	L	V	V	P	S	T
Query Conservation																																.												.																					.	.	.
Alig confidence																																.												.																					.	.	.
Template Conservation
Template Sequence		A	L	A	Q	V	A	V	F	P	A	L	S	G	K	T	D	A	Q	T	L	V	V	Y	S	S	L	D	E	P	L	A	T	P	M	I	E	G	F	Q	K	A	N	P	D	I	A	V	H	Y	E	D	M	L	T	G	E	I	Y	D	R	I	V	K	E	T	D	A	G	K	K	T	A	D	F	A	F	S	S	A	M
Template Known Secondary structure												T	T			T	T										S																	T	T																							T	T			B		S					S
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.							.
Predicted Secondary structure																																																																		.									.	.	.	.	.	.
Query SS confidence																																																																		.									.	.	.	.	.	.
Query Sequence		Y	Y	V	D	K	M	R	K	E	G	M	I	Q	K	I	D	K	S	K	L	T	N	F	S	N	L	D	P	D	M	L	N	K	P	F	D	P	N	N	D	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	.	T	S	W	A	D	L	W	K	.	.	.	.	.	.	P
Query Conservation																																																																		.									.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.																							.	.																		.									.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.																							.	.
Template Sequence		D	L	Q	V	K	L	S	N	D	G	Y	A	Q	R	S	D	.	.	.	.	.	.	.	L	A	M	S	A	R	W	P	A	W	A	N	W	R	N	T	A	Y	A	L	T	F	.	.	E	P	A	V	F	V	Y	H	K	P	S	F	T	T	E	K	P	P	A	T	R	A	E	F	V	D	Y	L	E	R	H	A	K
Template Known Secondary structure										T	T	S						.	.	.	.	.	.	.		T	T	G	G	G	S		G	G	G			T	T	T					B		.	.									G	G	G		S	S	S					S											T
Template Predicted Secondary structure																		.	.	.	.	.	.	.																							.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.								.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		E	Y	K	G	S	L	L	L	T	D	D	A	R	E	V	F	Q	M	A	L	R	K	L	G	Y	S	G	N	T	T	D	P	K	E	I	E	A	A	Y	N	E	L	K	K	L	M	P	N	V	.	.	A	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G	S	A	F	V
Query Conservation																																																			.	.
Alig confidence																									.	.	.	.	.	.	.																				.	.
Template Conservation																									.	.	.	.	.	.	.
Template Sequence		E	V	H	G	R	I	A	T	Y	D	I	E	R	S	G	V	G	F	L	F	M	S	R	.	.	.	.	.	.	.	D	Q	E	Q	F	G	D	I	W	S	V	I	K	A	M	G	A	A	G	V	K	V	Y	S	T	S	S	A	I	L	E	R	V	S	D	G	R	F	V	L	G	Y	N	I	L	G	S	Y	A	A
Template Known Secondary structure				T	T							T	T	T											.	.	.	.	.	.	.						T	T											T	T					S											T	T	S		S
Template Predicted Secondary structure																									.	.	.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190								.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		236	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		A	R	Q	A	.	G	T	P	I	D	V	V	W	P	K	E	G	G	I	F	W	M	D	S	L	A	I	P	A	N	A	K	N	K	E	G	A	L	K	L	I	N	F	L	L	R	P	D	V	A	K	Q	V	A	E	T	I	G	Y	P	T	P	N	L	A	A
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		D	W	A	S	R	H	P	D	V	G	I	V	L	P	K	D	Y	T	V	V	M	S	R	I	G	L	V	P	E	A	A	A	N	P	E	L	G	R	R	Y	L	E	F	F	M	S	K	E	G	Q	T	I	M	A	R	Q	L	Q	I	P	A	V	S	P	E	V
Template Known Secondary structure					T	T		T	T							S	S													T	T	B	S	S													S											S				B			T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions