Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFK9
Confidence100.00%DateThu Jan 5 11:26:37 GMT 2012
Rank27Aligned Residues321
% Identity15%Templatec2zykA_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:solute-binding protein; PDBTitle: crystal structure of cyclo/maltodextrin-binding protein2 complexed with gamma-cyclodextrin
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30......... 40.........50.........60.........70 .........80.........90........
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Query Sequence  DNNTLYFYNWTEYVP. . . . . PGLLEQFTKETGIKVIYSTYESNETMYAKLK. TYKDGAYDLVVPSTYYVDKMRKEGMIQK
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Template Sequence  KPDKLVVWENADDGVQLNNTKKWAGEFTKKTGIQVEVVPVALLKQQEKLTLDGPAGKGADLVTWPHDRLGEAVTKGLLQP
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SS



TTTGGGT
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SGGGTTTT

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   17..20.........30.........40.........50.........60.........70.........80.........90......
 
   99100.........110.........120.........130.........140.........150.... .....160.........170...
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Query Sequence  IDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADL. . . . . WKPEYKGSLLLTDDAREVF
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Template Sequence  IQV. DNSVKNQFDDVAMKALTYGGKLYGLPKAIESVALIYNKKLMGQVPATYDELFQYAKANNKPDEQKYGVLFEANNFY
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TB
TTT


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   97.. 100.........110.........120.........130.........140.........150.........160.........170.....
 
   174.....180..... ....190.........200.........210 .........220.........230......
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Query Sequence  QMALRKLGYSGN. . . . . . . . . . . . . . TTDPKEIEAAYNELKKLMPNVAAFN. . . SDNPANPYMEGEVNLGMIWNGSAFVA
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Template Sequence  YTYFLFAAKGAAVFKEQDGTLDPNEIGLNSPEAVQGMNEVQKWFTEARLPQSLKADTVNGLFKSGKVAAVINGPWAIKDY
Template Known Secondary structure  TTTT

S
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TTSTS


TT

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   176...180.........190.........200.........210.........220.........230.........240.........250.....
 
   237..240........ .250.........260.........270.........280.........290.........300.........310
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Query Sequence  RQAGTPIDVVWP. . . . . . KEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLLSPEVAN
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Template Sequence  QAAGINVGVAPLPKIDGKDAQTFIGVKGWYLSAYSKYPKYATELMQFLTSKEALASRFKETGEIPPQKELLN. . DPMIKN
Template Known Secondary structure  TT




BSSSS



TT
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   256...260.........270.........280.........290.........300.........310.........320....... ..330...
 
   311........320.........330. ........340........
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Query Sequence  DKTLYPDAETIKNGEWQNDVG. . . AASSIYEEYYQKLKAGR
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Template Sequence  NPVVNGFAKQASKGVPMPSIPEMGVVWEPINNAHTFVAQGK
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TT



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   334.....340.........350.........360.........370....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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