Job Description P0AFK9 Confidence 100.00% Date Thu Jan 5 11:26:37 GMT 2012 Rank 2 Aligned Residues 313 % Identity 31% Template c2v84A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:spermidine/putrescine abc transporter, periplasmic PDBTitle: crystal structure of the tp0655 (tppotd) lipoprotein of2 treponema pallidum Resolution 1.78 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	L	Y	F	Y	N	W	T	E	Y	V	P	P	G	L	L	E	Q	F	T	K	E	T	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	L	K	T	Y	K	D	G	A	Y	D	L	V	V	P	S	T	Y	Y	V	D	K	M	R	K	E	G	M	I	Q	K	I	D	K	S	K	L	T	N
Query Conservation
Alig confidence																																															.
Template Conservation																																															.
Template Sequence		D	V	L	Y	L	Y	N	W	T	Y	Y	T	P	T	S	L	I	K	K	F	E	Q	Q	Y	N	V	Q	V	V	Y	D	D	Y	A	S	N	E	D	M	F	A	K	L	S	I	.	G	A	S	G	Y	D	L	V	V	P	S	G	D	F	V	S	I	M	K	R	K	H	L	L	E	K	I	D	L	S	K	I	P	N
Template Known Secondary structure										T	T	T	S													T									S										S	S	.	S			S		S					B										T	T							G	G	G		G	G
Template Predicted Secondary structure																																															.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		F	S	N	L	D	P	D	M	L	N	K	P	F	D	.	P	N	N	D	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	T	S	W	A	D	L	W	K	P	E	Y	K	G	S	L	L	L	T	D	D	A	R	E	V	F	Q	M	A	L	R	K	L	G	Y	S	G	N
Query Conservation																.
Alig confidence																.																										.
Template Conservation																																										.
Template Sequence		V	Q	F	I	K	E	S	V	R	A	R	I	A	Y	D	P	K	M	E	Y	S	V	P	Y	Y	L	G	A	A	G	I	A	V	N	K	K	A	V	P	S	.	Y	A	R	T	W	S	I	F	S	R	K	D	L	A	Y	R	M	S	M	M	D	D	M	R	E	V	M	G	A	A	L	A	S	L	G	Y	N	V	N
Template Known Secondary structure		G	G	G	B									T	T	S	T	T		S	S															T	T	T			S	.			S	S	G	G	G	G	G		G	G	G	T	T	S					S													T	T			T	T
Template Predicted Secondary structure																																										.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																			.																																														.	.	.
Query SS confidence																			.																																														.	.	.
Query Sequence		T	T	D	P	K	E	I	E	A	A	Y	N	E	L	K	K	L	.	M	P	N	V	A	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G	S	A	F	V	A	R	Q	A	G	T	P	I	D	V	V	W	.	.	.	P	K	E	G	G	I	F	W	M	D	S	L	A	I
Query Conservation																			.																																														.	.	.
Alig confidence																			.																																														.	.	.
Template Conservation
Template Sequence		T	K	N	E	Q	E	L	A	Q	A	A	I	L	V	T	D	H	W	K	P	N	L	V	K	F	D	S	D	G	Y	A	K	S	F	A	S	G	D	F	V	V	A	H	G	F	A	E	A	F	F	A	E	T	P	E	A	M	H	E	H	I	D	F	F	I	P	Q	D	V	A	S	P	V	Y	V	D	S	F	C	I
Template Known Secondary structure																			T	G	G	G						S	S	S								T	S		S													S		G	G	G	G	G	G							T	T	T	T									B
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	N	A	K	N	K	E	G	A	L	K	L	I	N	F	L	L	R	P	D	V	A	K	Q	V	A	E	T	I	G	Y	P	T	P	N	L	A	A	R	K	L	L	S	P	E	V	A	N	D	K	T	L	Y	P	D	A	E	T	I	K	N	G	E	W	Q	N	D	V	G	A	A	S	S	I	Y	E	E	Y	Y
Query Conservation
Alig confidence																																												.	.	.	.	.
Template Conservation																																												.	.	.	.	.
Template Sequence		P	K	G	A	R	N	R	D	L	A	H	A	F	I	N	F	F	L	E	P	A	H	Y	A	E	F	L	D	T	F	G	F	P	S	T	I	H	R	E	A	A	A	.	.	.	.	.	Y	Q	K	K	T	P	Y	Y	S	E	H	D	L	E	R	G	T	L	K	T	D	V	G	A	A	I	E	H	Y	N	A	H	W
Template Known Secondary structure			T	T		S													T	S												T				S	S	B	T	T	G	G	G	.	.	.	.	.	G			S			S	S		G	G	G	G	S	S	S							G	G	G
Template Predicted Secondary structure																																												.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.						.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		342	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	L	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	V	R	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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