Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFK9
Confidence100.00%DateThu Jan 5 11:26:37 GMT 2012
Rank51Aligned Residues320
% Identity17%Templatec2uvgA_
PDB info PDB header:sugar-binding proteinChain: A: PDB Molecule:abc type periplasmic sugar-binding protein; PDBTitle: structure of a periplasmic oligogalacturonide binding2 protein from yersinia enterocolitica
Resolution2.2 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  NTLYFYNWTEYVP. . . . PGLLEQFTKET. GIKVIYSTYESNETMYAKLK. TYKDGAYDLVVPSTYYVDKMRKEGMIQKID
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Template Sequence  VNLRMSWWGGNGRHEVTLKALEEFHKEHPNINVKAEYTGWDGHLSRLTTQIAGGTEPDVMQTNWNWLPIFSKDGTGFYNL
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   101..... ...110.........120.........130.........140.........150......... 160....
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Query Sequence  KSKLTN. . FSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEY. . . . . . . . . . . . . . KGSLL
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Template Sequence  FSVKEQLDLAQFDPKELQQTTVNGKLNGIPISVTARIFYFNDATWAKAGLEYPKTWDELLAAGQVFKEKLGDQYYPVVLE
Template Known Secondary structure  GGGTTTS
GGGS
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SST
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B

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   108.110.........120.........130.........140.........150.........160.........170.........180.......
 
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Query Sequence  LTDDAREVFQMALRKLGYSGNT. . . . . . . TDPKEIEAAYNELKKLMPNVAA. . . . . . . . . FNSDNPANPYMEGEVNLGMI
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Template Conservation                  
                    
      
   
                          
    
Template Sequence  HQDTLALIRSYMTQKYNIPTIDEANKKFAYSPEQWVEFFTMYKTMVDNHVMPSTKYYASFGKSNMYEMKPWNGEWAGTYM
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   188.190.........200.........210.........220.........230.........240.........250.........260.......
 
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Query Sequence  WNGSAFVARQAGTPIDVVWPKE. . . . . . . . . . . GGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPN
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Template Sequence  WNSTITKYSDNLTKPAKLVLGPYPMLPGAKDAGLFFKPAQMLSIGKSTKHPQESAMLINFLLNSKEGVELGLERGVPLSA
Template Known Secondary structure  GGGTS
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Query Sequence  LAARKLLSPEVANDKTLYPDAETIKN. . . . . . . . . GEWQNDVGAASSIYEEYYQKLKAGR
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Template Sequence  TAVTQ. . LRASGVIKDEDPSVAGLNMALELPHKMTTSPYFDDPQIVSLFGDAIQYIDYGQ
Template Known Secondary structure  ..TT
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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