Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFK9
Confidence100.00%DateThu Jan 5 11:26:37 GMT 2012
Rank36Aligned Residues297
% Identity16%Templatec2qryD_
PDB info PDB header:transport proteinChain: D: PDB Molecule:thiamine-binding periplasmic protein; PDBTitle: periplasmic thiamin binding protein
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30....... ..40.........50.........60.........70 .........80.........90........
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Query Sequence  NNTLYFYNWTEY. . . . . VPPGLLEQFTKETGIKVIYSTYESNETMYAKLK. . TYKDGAYDLVVPSTYYVDKMRKEGMIQK
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Template Sequence  KPVLTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRXEGKNSKADVVLGLDNNLLDAASKTGLFAK
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STTSSSS
S
S
GGG


SGGGTTT
B

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   1920.........30.........40.........50.........60.........70.........80.........90........
 
   99100.........110.........120.........130.........140.........150.........160.........170........
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Query Sequence  IDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALR
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Template Sequence  S. . . . . . . . . GVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKN. PPQSLKELVESDQNWRVIYQDPRTSTPGLGLL
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   99 100.........110.........120.........130...... ...140.........150.........160........
 
   179180.........190.........200...... ...210.........220.........230....... ..240.........250....
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Query Sequence  KLGYSGNTTDPKEIEAAYNELKKLMPNV. . AAFNSDNPANPYMEGEVNLGMIWNGSAFVAR. . QAGTPIDVVWPKEGGIF
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Template Sequence  LWXQKVYG. . . . . . DDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYL
Template Known Secondary structure  G......GGTTSSTTS
STT






TT
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   169170...... ...180.........190.........200.........210.........220.........230.........240..
 
   255....260.........270.........280.........290.........300.........310.........320.........330....
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Query Sequence  WMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPDAETIKNGEWQNDVGAAS
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Template Sequence  QVEVAARTAASKQPELAQKFLQFXVSPAFQNAIPTGNWXYPVANVTL. . . PAGFEKLTKPATTL. . . . . EFTPAEVAAQR
Template Known Secondary structure  BTT
S
TSTTT
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   243......250.........260.........270.........280......... 290.........300... ......310....
 
   335....340......
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Query Sequence  SIYEEYYQKLKA
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Template Sequence  QAWISEWQRAVS
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   315....320......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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