Job Description P0AFK9 Confidence 100.00% Date Thu Jan 5 11:26:37 GMT 2012 Rank 41 Aligned Residues 315 % Identity 17% Template c2fncA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:maltose abc transporter, periplasmic maltose-binding PDBTitle: thermotoga maritima maltotriose binding protein bound with2 maltotriose. Resolution 1.70 Å

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		28	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure														.	.																																.
Query SS confidence														.	.																																.
Query Sequence		T	L	Y	F	Y	N	W	T	E	Y	V	P	.	.	P	G	L	L	E	Q	F	T	K	E	T	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	L	K	.	T	Y	K	D	G	A	Y	D	L	V	V	P	S	T	Y	Y	V	D	K	M	R	K	E	G	M	I	Q	K	I	D	K	S	K	L
Query Conservation														.	.																																.
Alig confidence														.	.																																.																																	.	.
Template Conservation																																																																																.	.
Template Sequence		K	L	T	I	W	C	S	E	K	Q	V	D	I	L	Q	K	L	G	E	E	F	K	A	K	Y	G	I	P	V	E	V	Q	Y	V	D	F	G	S	I	K	S	K	F	L	T	A	A	P	Q	G	Q	G	A	D	I	I	V	G	A	H	D	W	V	G	E	L	A	V	N	G	L	I	E	P	I	P	N	F	.	.
Template Known Secondary structure																											S																					G	G	G	T		S		S						G	G	G							T	T		B							.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.									160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.
Query Sequence		T	N	F	S	N	L	D	P	D	M	L	N	K	P	F	D	P	N	N	D	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	T	S	W	A	D	L	W	K	P	E	Y	.	.	.	.	.	.	.	.	K	G	S	L	L	L	T	D	D	A	R	E	V	F	Q	M	A
Query Conservation																																																									.	.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	D	L	K	N	F	Y	D	T	A	L	K	A	F	S	Y	G	G	K	L	Y	G	V	P	Y	A	M	E	A	V	A	L	I	Y	N	K	D	Y	V	D	S	V	P	K	T	M	D	E	L	I	E	K	A	K	Q	I	D	E	E	Y	G	G	E	V	R	G	F	I	Y	D	V	A	N	F	Y	F	S	A	P	F
Template Known Secondary structure		G	G	G	G	G	B								T			T	T																		T	T	T		S	S			S	B															T	T	T	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		177	.	.	180	.	.	.	.	.	.													.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.				.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query Sequence		L	R	K	L	G	Y	S	G	N	T	.	.	.	.	.	.	.	.	.	.	.	.	T	D	P	K	E	I	E	A	A	Y	N	E	L	K	K	L	M	P	N	V	.	.	.	A	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G	S	A	F	V	A	R	Q	A	G	T
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation
Template Sequence		I	L	G	Y	G	G	Y	V	F	K	E	T	P	Q	G	L	D	V	T	D	I	G	L	A	N	E	G	A	V	K	G	A	K	L	I	K	R	M	I	D	E	G	V	L	T	P	G	D	N	Y	G	T	M	D	S	M	F	K	E	G	L	A	A	M	I	I	N	G	L	W	A	I	K	S	Y	K	D	A	G	I
Template Known Secondary structure					T	T								T	T									T	T	S																T	T	S	S		T	T												T	T									G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		242	.	.	.	.	.								.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.																													.
Query SS confidence								.	.	.	.	.	.	.																													.
Query Sequence		P	I	D	V	V	W	.	.	.	.	.	.	.	P	K	E	G	G	I	F	W	M	D	S	L	A	I	P	A	N	A	K	N	K	E	G	A	L	K	L	I	.	N	F	L	L	R	P	D	V	A	K	Q	V	A	E	T	I	G	Y	P	T	P	N	L	A	A	R	K	L	L	S	P	E	V	A	N	D	K	T
Query Conservation								.	.	.	.	.	.	.																													.
Alig confidence								.	.	.	.	.	.	.																													.																												.	.	.	.
Template Conservation																																																																							.	.	.	.
Template Sequence		N	Y	G	V	A	P	I	P	E	L	E	P	G	V	P	A	K	P	F	V	G	V	Q	G	F	M	I	N	A	K	S	P	N	K	V	I	A	M	E	F	L	T	N	F	I	A	R	K	E	T	M	Y	K	I	Y	L	A	D	P	R	L	P	A	R	K	D	V	L	E	.	.	.	.	L	V	K	D	N	P	D
Template Known Secondary structure										B	S	B	T	T	B														B	T	T		T	T											T	T	T	S											S		S			S	B						.	.	.	.			T	T
Template Predicted Secondary structure																																																																							.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.					.	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.				.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		L	Y	P	D	A	E	T	I	K	N	G	E	W	Q	N	D	V	G	A	.	.	.	A	S	S	I	Y	E	E	Y	Y	Q	K	L	K	A	G	R
Query Conservation																					.	.	.
Alig confidence																					.	.	.
Template Conservation
Template Sequence		V	V	A	F	T	Q	S	A	S	M	G	T	P	M	P	N	V	P	E	M	A	P	V	W	S	A	M	G	D	A	L	S	I	I	I	N	G	Q
Template Known Secondary structure											T							S	G	G	G	T	T														T	T	S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions