Job Description P0AFK9 Confidence 100.00% Date Thu Jan 5 11:26:37 GMT 2012 Rank 34 Aligned Residues 319 % Identity 13% Template c1ursA_ PDB info PDB header:maltose-binding protein Chain: A: PDB Molecule:maltose-binding protein; PDBTitle: x-ray structures of the maltose-maltodextrin binding2 protein of the thermoacidophilic bacterium alicyclobacillus3 acidocaldarius Resolution 1.45 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure															.	.	.	.												.																					.
Query SS confidence															.	.	.	.												.																					.
Query Sequence		N	T	L	Y	F	Y	N	W	T	E	Y	V	P	.	.	.	.	P	G	L	L	E	Q	F	T	K	E	T	.	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	L	K	.	T	Y	K	D	G	A	Y	D	L	V	V	P	S	T	Y	Y	V	D	K	M	R	K	E	G	M	I	Q	K	I	D
Query Conservation															.	.	.	.												.																					.
Alig confidence															.	.	.	.												.																					.
Template Conservation
Template Sequence		Q	T	I	T	V	W	S	W	Q	T	G	P	E	L	Q	D	V	K	Q	I	A	A	Q	W	A	K	A	H	G	D	K	V	I	V	V	D	Q	S	S	N	P	K	G	F	Q	F	Y	A	T	A	A	R	T	G	K	G	P	D	V	V	F	G	M	P	H	D	N	N	G	V	F	A	E	E	G	L	M	A	P	V
Template Known Secondary structure									S																														T	T		T	T		T	T								T	T				S							G	G	G							T	T		B
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	K	L	T	N	F	S	N	L	D	P	D	M	L	N	K	P	F	D	P	N	N	D	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	T	S	W	A	D	L	W	K	P	E	Y	K	G	S	L	L	L	T	D	D	A	R	E	V	F	Q	M	A	L	R	K	L
Query Conservation
Alig confidence																																																.
Template Conservation																																																.
Template Sequence		P	S	G	V	L	N	T	G	L	Y	A	P	N	T	I	D	A	I	K	V	N	G	T	M	Y	S	V	P	V	S	V	Q	V	A	A	I	Y	Y	N	K	K	L	V	P	Q	P	.	P	Q	T	W	A	E	F	V	K	D	A	N	A	H	G	F	M	Y	D	Q	A	N	L	Y	F	D	Y	A	I	I	G	G	Y
Template Known Secondary structure			T	T	S			G	G	G	S							T	T			T	T				S														T	T	T		S	S		.			S																	T	T												T
Template Predicted Secondary structure																																																.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		181	.	.	.	.	.													.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.					.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query Sequence		G	Y	S	G	N	T	.	.	.	.	.	.	.	.	.	.	.	.	T	D	P	K	E	I	E	A	A	Y	N	E	L	K	K	L	M	P	N	V	.	.	.	.	A	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G	S	A	F	V	A	R	Q	A	G	T	P	I	D
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Template Conservation
Template Sequence		G	G	Y	V	F	K	D	N	N	G	T	L	D	P	N	N	I	G	L	D	T	P	G	A	V	Q	A	Y	T	L	M	R	D	M	V	S	K	Y	H	W	M	T	P	S	T	N	G	S	I	A	K	A	E	F	L	A	G	K	I	G	M	Y	V	S	G	P	W	D	T	A	D	I	E	K	A	K	I	D	F	G
Template Known Secondary structure		T								T	T									S	S	S																T	S		S			T	T												T	T			S						G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		245	.	.	.								.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.
Query Sequence		V	V	W	P	.	.	.	.	.	.	.	K	E	G	G	I	F	W	M	D	S	L	A	I	P	A	N	A	K	N	K	E	G	A	L	K	L	I	N	F	L	L	R	P	D	V	A	K	Q	V	A	E	T	I	G	Y	P	T	P	N	L	A	A	R	K	L	L	S	P	E	V	A	N	D	K	T	L	Y	P	D
Query Conservation						.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.																																																							.	.
Template Conservation																																																																			.	.
Template Sequence		V	T	P	W	P	T	L	P	N	G	K	H	A	T	P	F	L	G	V	I	T	A	F	V	N	K	E	S	K	T	Q	A	A	D	W	S	L	V	Q	A	L	T	S	A	Q	A	Q	Q	M	Y	F	R	D	S	Q	Q	I	P	A	L	L	S	V	Q	R	.	.	S	S	A	V	Q	S	S	P	T	F	K	A	F
Template Known Secondary structure									T	T	S															B	T	T		S													T	S																S	S					T	.	.	S					T
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.			.	.	.	.	.	.	340	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.			.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		A	E	T	I	K	N	G	E	W	Q	N	D	V	G	A	A	S	S	I	Y	E	.	.	E	Y	Y	Q	K	L	K	A	G	R
Query Conservation																							.	.
Alig confidence																							.	.
Template Conservation
Template Sequence		V	E	Q	L	R	Y	A	V	P	M	P	N	I	P	Q	M	Q	A	V	W	Q	A	M	S	I	L	Q	N	I	I	A	G	K
Template Known Secondary structure					G	G	G							S	T									T	T								T	S
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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