Job Description P0A7U3 Confidence 100.00% Date Thu Jan 5 11:06:12 GMT 2012 Rank 4 Aligned Residues 83 % Identity 31% Template c2zkqs_ PDB info PDB header:ribosomal protein/rna Chain: S: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.						.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.
Query SS confidence								.	.	.	.	.
Query Sequence		R	S	L	K	K	G	.	.	.	.	.	P	F	I	D	L	H	L	L	K	K	V	E	K	A	V	E	S	G	D	K	K	P	L	R	T	W	S	R	R	S	T	I	F	P	N	M	I	G	L	T	I	A	V	H	N	G	R	Q	H	V	P	V	F	V	T	D	E	M	V	G	H	K	L	G	E	F	A	P	T
Query Conservation								.	.	.	.	.
Alig confidence								.	.	.	.	.
Template Conservation
Template Sequence		R	R	L	N	R	G	L	R	R	K	Q	H	S	L	L	K	R	L	R	K	A	K	K	E	A	P	P	M	E	K	P	E	V	V	K	T	H	L	R	D	M	I	I	L	P	E	M	V	G	S	M	V	G	V	Y	N	G	K	T	F	N	Q	V	E	I	K	P	E	M	I	G	H	Y	L	G	E	F	S	I	T
Template Known Secondary structure						S	S					T														S	S	T	T				S							T	T		B			T	T	T	T	T	S							S	S									T	T	T	T	T	S	B	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		78	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	Y	R	G	H	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	K	P	V	K	H	G	R
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions