Job Description P52106 Confidence 99.97% Date Thu Jan 5 12:05:21 GMT 2012 Rank 4 Aligned Residues 205 % Identity 32% Template c3klnC_ PDB info PDB header:transcription Chain: C: PDB Molecule:transcriptional regulator, luxr family; PDBTitle: vibrio cholerae vpst Resolution 3.08 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																														.	.	.	.	.
Query SS confidence																																														.	.	.	.	.
Query Sequence		H	G	H	T	L	L	L	I	T	K	S	S	L	Q	A	T	A	L	L	Q	H	L	K	Q	S	L	A	I	T	G	K	L	H	N	I	Q	R	S	L	D	D	I	S	S	.	.	.	.	.	G	S	I	I	L	L	D	M	M	E	A	D	K	K	L	I	H	Y	W	Q	D	T	L	S	R	K	N	N	N	I	K
Query Conservation																																														.	.	.	.	.
Alig confidence																																														.	.	.	.	.
Template Conservation
Template Sequence		N	K	L	N	V	R	M	L	S	D	V	C	M	Q	S	R	L	L	K	E	A	L	E	S	K	L	P	L	A	L	E	I	T	P	F	S	E	L	W	L	E	E	N	K	P	E	S	R	S	I	Q	M	L	V	I	D	Y	S	R	I	S	D	D	V	L	T	D	Y	S	S	F	K	H	I	S	C	P	D	A	K
Template Known Secondary structure			S							S			S														S	S								G	G	G	G	G	G	T	T	T		S	G	G	G	G								G	G	G			T	T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		I	L	L	L	N	T	P	E	D	Y	P	Y	R	D	I	E	N	W	P	H	I	N	G	V	F	Y	S	M	E	D	Q	E	R	V	V	N	G	L	Q	G	V	L	R	G	E	C	Y	F	T	Q	K	L	A	S	Y	L	I	.	.	T	H	S	G	N	Y	R	Y	N	S	T	E	S	A	L	L	T	H	R	E	K
Query Conservation																																																											.	.
Alig confidence																																																											.	.
Template Conservation
Template Sequence		E	V	I	I	N	C	P	Q	D	I	E	H	K	L	L	F	K	W	N	N	L	A	G	V	F	Y	I	D	D	D	M	D	T	L	I	K	G	M	S	K	I	L	Q	D	E	M	W	L	T	R	K	L	A	Q	E	Y	I	L	H	Y	R	A	G	N	S	V	V	T	S	Q	M	Y	A	K	L	T	K	R	E	Q
Template Known Secondary structure									S	S			G	G	G	G	G	G	S	T	T							T	T															T	T			B																T							T	T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	L	N	K	L	R	I	G	A	S	N	N	E	I	A	R	S	L	F	I	S	E	N	T	V	K	T	H	L	Y	N	L	F	K	K	I	A	V	K	N	R	T	Q	A	V	S	W	A	N	D	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	I	I	K	L	L	G	S	G	A	S	N	I	E	I	A	D	K	L	F	V	S	E	N	T	V	K	T	H	L	H	N	V	F	K	K	I	N	A	K	N	R	L	Q	A	L	I	W	A	K	N	N
Template Known Secondary structure									T	T								T	T	T	T																		T		S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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