Return to main results Retrieve Phyre Job Id

Job DescriptionP52106
Confidence99.71%DateThu Jan 5 12:05:21 GMT 2012
Rank16Aligned Residues67
% Identity22%Templatec2q0oA_
PDB info PDB header:transcriptionChain: A: PDB Molecule:probable transcriptional activator protein trar; PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   147..150.........160.........170.........180.........190.........200.........210...
Predicted Secondary structure 






















Query SS confidence 


































































Query Sequence  RYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDN
Query Conservation           

 

  

  
  
 

 


  
 

  


 
   
  



 

  

  
   
Alig confidence 


































































Template Conservation           

 

 


 


 
 
  


  
 

  

  

  
  


  

 



 
   
Template Sequence  KTVLNPKQMLSPREMLCLVWASKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDR
Template Known Secondary structure  T



GGGS

TT




T
SST
Template Predicted Secondary structure 






















Template SS confidence 


































































   167..170.........180.........190.........200.........210.........220.........230...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions