Job Description P25531 Confidence 24.49% Date Thu Jan 5 11:42:00 GMT 2012 Rank 126 Aligned Residues 161 % Identity 10% Template c2dt5A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:at-rich dna-binding protein; PDBTitle: crystal structure of ttha1657 (at-rich dna-binding protein) from2 thermus thermophilus hb8 Resolution 2.16 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		V	E	L	L	A	L	F	L	R	T	G	T	R	G	K	D	V	L	T	L	A	K	E	M	L	E	N	F	G	S	L	Y	G	L	L	T	S	E	Y	E	Q	F	S	G	V	.	.	H	G	I	G	V	A	K	F	A	Q	L	K	G	I	A	E	L	A	R	R	Y	Y	N	V	R	M	R	E	E	S	P	L	L
Query Conservation																																															.	.
Alig confidence																										.	.	.	.																		.	.						.	.	.	.
Template Conservation																										.	.	.	.																									.	.	.	.
Template Sequence		L	R	I	L	E	E	L	E	A	Q	G	V	H	R	T	S	S	E	Q	L	G	G	L	A	.	.	.	.	Q	V	T	A	F	Q	V	R	K	D	L	S	Y	F	G	S	Y	G	T	R	G	V	G	Y	.	.	.	.	T	V	P	V	L	K	R	E	L	R	H	I	L	G	L	N	R	K	W	G	L	C	I	V
Template Known Secondary structure											T	T														.	.	.	.	T	S												T	T					T	T	T			.	.	.	.														T	T	T	S
Template Predicted Secondary structure																										.	.	.	.																									.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.					.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.					.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	E	M	T	R	E	F	L	Q	S	Q	L	T	G	E	E	R	E	I	F	M	V	I	F	L	D	S	Q	H	R	V	I	T	H	R	R	L	F	S	G	T	L	N	H	V	E	V	H	P	R	E	I	I	R	E	A	I	K	I	N	A	S	A	L	I	L	A	H	N	H	P	S	G	C	A	E	P	S	K
Query Conservation
Alig confidence																			.																			.	.	.	.	.	.																											.	.	.	.	.	.	.	.
Template Conservation																			.																			.	.	.	.	.	.																											.	.	.	.	.	.	.	.
Template Sequence		G	M	G	R	L	G	S	A	L	A	D	Y	P	G	F	G	E	.	S	F	E	L	R	G	F	F	D	V	D	P	E	K	V	G	R	P	.	.	.	.	.	.	V	R	G	G	V	I	E	H	V	D	L	L	P	Q	R	V	P	G	R	I	E	I	A	L	L	T	.	.	.	.	.	.	.	.	V	P	R	E
Template Known Secondary structure				S										S				S	.	S									S		T	T	T	T	T			.	.	.	.	.	.		T	T						G	G	G					S	T	T	T								.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																			.																			.	.	.	.	.	.																											.	.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.									.	.	150	.
		183	.	.	.	.	.	.	190	.	.	.	.	.								.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.
Query Sequence		A	D	K	L	I	T	E	R	I	I	K	S	C	.	.	.	.	.	.	.	Q	F	M	D	L	R	V	L	D	H	I	V	I
Query Conservation															.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	Q	K	A	A	D	L	L	V	A	A	G	I	K	G	I	L	N	F	A	P	V	V	L	E	V	P	K	E	V	A	V
Template Known Secondary structure														T								S	S	S						T	T	S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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