Job Description P45579 Confidence 57.82% Date Thu Jan 5 12:03:26 GMT 2012 Rank 100 Aligned Residues 85 % Identity 11% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20				.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																																																									.	.
Query SS confidence																					.	.	.																																																									.	.
Query Sequence		P	H	N	P	I	R	V	V	V	G	P	A	N	Y	F	S	H	P	G	.	.	.	S	F	N	H	L	H	D	F	F	T	D	E	Q	L	S	R	A	V	W	I	Y	G	K	R	A	I	A	A	A	Q	T	K	L	P	P	A	F	G	L	P	G	A	K	H	I	L	F	R	G	H	C	S	E	S	D	V	.	.
Query Conservation																					.	.	.																																																									.	.
Alig confidence														.	.	.	.				.	.	.														.																																											.	.
Template Conservation														.	.	.	.																				.
Template Sequence		E	K	P	T	I	L	L	M	V	G	I	Q	.	.	.	.	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	.	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K
Template Known Secondary structure		S	S	S									T	.	.	.	.	T	S	S														T	T	T	.											S	S	T											G	G	G	T							T	T
Template Predicted Secondary structure														.	.	.	.																				.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	L	A	A	E	S	G	D	D	R	S	V	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	V	D	Y	F	K	S	K	G	V	D	I	I	I
Template Known Secondary structure										T	T		S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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