Job Description P45579 Confidence 100.00% Date Thu Jan 5 12:03:26 GMT 2012 Rank 19 Aligned Residues 274 % Identity 14% Template c3clhA_ PDB info PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: crystal structure of 3-dehydroquinate synthase (dhqs)from2 helicobacter pylori Resolution 2.40 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.					.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.							.	.	.
Query SS confidence																																																				.	.	.	.							.	.	.
Query Sequence		E	Q	L	S	R	A	V	W	I	Y	G	K	R	A	I	A	A	A	Q	T	K	L	P	P	A	F	G	L	P	G	A	K	H	I	L	F	R	G	H	C	S	E	S	D	V	Q	Q	L	A	A	.	.	.	.	E	S	G	D	D	R	.	.	.	S	V	V	I	G	V	G	G	G	A	L	L	D	T	A	K	A
Query Conservation																																																				.	.	.	.							.	.	.
Alig confidence																																																				.	.	.	.							.	.	.
Template Conservation
Template Sequence		K	L	K	Q	K	A	L	I	I	S	D	S	I	V	A	G	L	H	L	P	Y	L	L	E	R	L	K	A	L	E	V	R	V	C	V	I	E	S	G	E	K	Y	K	N	F	H	S	L	E	R	I	L	N	N	A	F	E	M	Q	L	N	R	H	S	L	M	I	A	L	G	G	G	V	I	S	D	M	V	G	F
Template Known Secondary structure				S	S												T	T	T						T	T				S									S	S	G	G	G		S														T	T			T	T								S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		105	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		L	A	.	.	R	R	L	G	L	P	F	V	A	V	P	T	I	A	A	T	C	A	A	W	T	P	L	S	V	W	Y	N	D	A	G	Q	A	L	H	Y	E	I	F	D	D	A	N	F	M	V	L	V	E	P	E	I	I	L	N	A	P	Q	Q	Y	L	L	A	G	I	G	D	T	L	A	K	W	Y	E	A	V
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		A	S	S	I	Y	F	R	G	I	D	F	I	N	I	P	T	T	L	L	A	Q	V	D	A	S	V	G	G	K	T	G	I	N	T	P	Y	G	K	N	L	I	G	S	F	H	Q	P	K	A	V	Y	M	D	L	A	F	L	K	T	L	E	K	R	E	F	Q	A	G	V	A	E	I	I	K	M	A	V	C	F	D
Template Known Secondary structure						G	G	G										S						T	T	S	S	S								T	T												S						T	T	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	A	P	Q	P	E	T	L	P	L	T	V	R	L	G	I	N	N	A	Q	A	I	R	D	V	L	L	N	S	S	E	Q	A	L	S	D	Q	Q	N	Q	Q	L	T	Q	S	F	C	D	V	V	D	A	I	I	A	G	G	G	M	V	G	G	L	G	D	R	F	T	R	V	A	A	A	H	A	V	H	N	G
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template Sequence		K	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	E	R	L	E	T	K	D	L	K	D	.	.	.	.	.	.	.	.	C	L	E	E	V	I	F	Q	S	V	N	I	K	A	Q	V	V	R	A	G	L	N	Y	G	H	T	F	G	H	A
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S		T	T	T	.	.	.	.	.	.	.	.	S																		T	T	T	T	T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template SS confidence
		184	.																													.	.	.	.	190	.	.	.	.	.	.	.									.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290						.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.
Query SS confidence																														.	.	.	.	.
Query Sequence		L	T	V	L	P	Q	T	E	K	F	L	H	G	T	K	V	A	Y	G	I	L	V	Q	S	A	L	L	G	.	.	.	.	.	Q	D	D	V	L	A	Q	L	T	G	A	Y	Q	R	F	H	L	P	T	T	L	A	E	L	E	V	D	I	N	N	Q	A	E	I	D	K	V	I	A	H	T	L	R	P	V	E	S
Query Conservation																														.	.	.	.	.
Alig confidence																														.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	E	K	E	T	D	Y	E	R	F	L	H	G	E	A	I	A	I	G	M	R	M	A	N	D	L	A	L	S	L	G	M	L	T	L	K	E	Y	E	R	I	E	N	L	L	K	K	F	D	L	I	F	H	Y	K	F	I	L	P	K	G	V	G	A	F	E	V	A	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T	T	S	S																						T	S	S															T	T												S	S	S						.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	Y	L	P	V	T	L	T	P	D	T	L	R	A	A	F	K	K	V	E
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	S	H	I	P	K	E	T	I	I	K	V	L	E	K	W	H
Template Known Secondary structure		.	.	.	.	.												S	T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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