Job Description P45579 Confidence 23.67% Date Thu Jan 5 12:03:26 GMT 2012 Rank 217 Aligned Residues 83 % Identity 16% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20				.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.																																														.
Query SS confidence																			.	.	.																																														.
Query Sequence		N	P	I	R	V	V	V	G	P	A	N	Y	F	S	H	P	G	.	.	.	S	F	N	H	L	H	D	F	F	T	D	E	Q	L	S	R	A	V	W	I	Y	G	K	R	A	I	A	A	A	Q	T	K	L	P	P	A	F	G	L	P	G	A	K	H	I	.	L	F	R	G	H	C	S	E	S	D	V	Q	Q	L
Query Conservation																			.	.	.																																														.
Alig confidence												.	.	.	.				.	.	.														.																																.
Template Conservation												.	.	.	.																				.
Template Sequence		Q	N	V	I	L	L	V	G	I	Q	.	.	.	.	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	.	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E
Template Known Secondary structure											S	.	.	.	.	S	S	S	T	T															.									S				T	T	G	G	G	S	S							S	S							S	S	S			S	S	S	T	T
Template Predicted Secondary structure												.	.	.	.																				.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	E	S	G	D	D	R	S	V	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	M	E	K	F	K	K	A	D	V	L	I
Template Known Secondary structure					T	T	S	S		S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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