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Job DescriptionP05458
Confidence100.00%DateThu Jan 5 10:58:43 GMT 2012
Rank12Aligned Residues407
% Identity18%Templatec3hdiA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:processing protease; PDBTitle: crystal structure of bacillus halodurans metallo peptidase
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   45....50.........60.........70.........80.........90.........100.........110.........120....
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Query Sequence  QAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAP
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Template Sequence  NTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRS. AQEIAEFFDSIGGQVNAFTSK
Template Known Secondary structure 
TTS

TT
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GGG

GGGTTTTSBBSSSB.TTTS

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   3......10.........20.........30.........40.........50.........60 .........70.........80.
 
   125....130.........140.........150.........160.........170.........180.........190.........200....
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Query Sequence  YRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLE
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Template Sequence  EYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVE
Template Known Secondary structure  S
GGGSB


T
TTSGGGS
TT

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   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   205....210.........220.........230.........240.........250.........260.........270.........280....
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Query Sequence  TLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPA
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Template Sequence  TLNSFN. . . . EGMLRHYMDRFYTGDYVVISVAGNVHDELID. KIKETFSQVKPTTYNYQGEKPMFLPN. . . . . RIVRKKE
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   162..... ..170.........180.........190........ .200.........210.........220.... .....230.
 
   285....290.........300.........310.........320........ .330.........340.........350.........360...
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Query Sequence  LPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQ. KQGLVEGISANSDPIVNGNSGVLAISASLTDKGLA
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Template Sequence  TEQAHLCLGYPGLPIGD. KDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDS. . GMLTIYAGTGHD. . .
Template Known Secondary structure 
S


TT
.TTTSSSSSTTTT


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   232.......240........ .250.........260.........270.........280.........290... ......300.....
 
   364.....370.........380.........390.........400.........410.........420.........430.........440...
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Query Sequence  NRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVK
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Template Sequence  QLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVS
Template Known Secondary structure  GTT


TT
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   306...310.........320.........330.........340.........350.........360.........370.........380.....
 
   444.....450.........460........
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Query Sequence  ERLAMMTPQNARIWYISPKEPHNKT
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Template Conservation    
   
     
 

     
   
Template Sequence  RLAKILLSASPSISLINANGELPKA
Template Known Secondary structure  TTS

SS
S

S
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   386...390.........400.........410
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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