Job Description P05458 Confidence 100.00% Date Thu Jan 5 10:58:43 GMT 2012 Rank 23 Aligned Residues 313 % Identity 14% Template c3cxhM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:cytochrome b-c1 complex subunit 2, mitochondrial; PDBTitle: structure of yeast complex iii with isoform-2 cytochrome c2 bound and definition of a minimal core interface for3 electron transfer. Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	L	V	S	D	P	Q	A	V	K	S	L	S	A	L	V	V	P	V	G	S	L	E	D	P	E	A	Y	Q	G	L	A	H	Y	L	E	H	M	S	L	M	G	S	K	K	Y	P	Q	A	D	S	L	A	E	Y	L	K	M	H	G	G	S	H	N	A	S	T	A	P	Y	R	T	A	F	Y	L	E	V	E
Query Conservation
Alig confidence																													.	.																				.
Template Conservation																													.	.																				.
Template Sequence		T	V	S	A	R	D	A	P	T	K	I	S	T	L	A	V	K	V	H	G	G	S	R	Y	A	T	K	.	.	D	G	V	A	H	L	L	N	R	F	N	F	Q	N	T	N	T	R	S	.	A	L	K	L	V	R	E	S	E	L	L	G	G	T	F	K	S	T	L	D	R	E	Y	I	T	L	K	A	T	F	L
Template Known Secondary structure									S		S									S		S	G	G	G		S	S	.	.	T	T									T	T	S		B	S	S	S		.												T									S	S
Template Predicted Secondary structure																													.	.																				.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		N	D	A	L	P	G	A	V	D	R	L	A	D	A	I	A	E	P	L	L	D	K	K	Y	A	E	R	E	.	R	N	A	V	N	A	E	L	T	M	A	R	T	R	D	G	M	R	M	A	Q	V	S	A	E	T	I	N	P	A	H	P	G	S	K	F	S	G	G	N	L	E	T	L	S	D	K	P	G	N	P
Query Conservation																														.
Alig confidence																														.																													.											.	.								.	.	.
Template Conservation																																																											.											.	.								.	.	.
Template Sequence		K	D	D	L	P	Y	Y	V	N	A	L	A	D	V	L	Y	K	T	A	F	K	P	H	E	L	T	E	S	V	L	P	A	A	R	Y	D	Y	A	V	A	E	Q	C	P	V	K	S	A	E	D	Q	L	Y	A	I	T	F	.	R	K	G	L	G	N	P	L	L	Y	.	.	D	G	V	E	R	V	S	.	.	.
Template Known Secondary structure		G	G	G															B										T																													S	.	S	S	S	T	T	S		S	S		.	.		S	S	S				.	.	.
Template Predicted Secondary structure																																																											.											.	.								.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	Q	A	L	K	D	F	H	E	K	Y	Y	S	A	N	L	M	K	A	V	I	Y	S	N	K	P	L	P	E	L	A	K	M	A	A	D	T	F	G	R	V	P	N	K	E	S	K	K	P	E	I	T	V	P	V	V	T	D	A	Q	K	G	I	I	I	H	Y	V	P	A	L	P	R	K	V	L	R	V	E
Query Conservation
Alig confidence		.																																																												.	.	.	.	.
Template Conservation		.																																																												.	.	.	.	.
Template Sequence		.	L	Q	D	I	K	D	F	A	D	K	V	Y	T	K	E	N	L	E	V	S	G	E	N	V	V	E	A	D	L	K	R	F	V	D	E	S	L	L	S	T	L	P	A	G	K	S	L	V	S	K	S	E	P	K	F	F	L	G	E	.	.	.	.	.	E	N	R	V	R	F	I	G	D	S	V	A	A	I	G
Template Known Secondary structure		.														G	G	G							S	S												S	T	T	T	T	S									S	S							S		.	.	.	.	.							S	S
Template Predicted Secondary structure		.																																																												.	.	.	.	.
Template SS confidence
			169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.						.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	I	D	N	N	S	A	K	F	R	S	K	T	D	E	L	I	T	Y	L	I	G	N	R	S	P	G	T	L	S	D	W	L	Q	K	Q	G	L	V	E	G	I	S	A	N	S	D	P	I	V	N	G	N	S	G	V	L	A	I	S	A	S	L	T	D	K	G	L	A	N	R	D	Q	V	V	A	A	I	F
Query Conservation
Alig confidence							.	.	.	.																	.									.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.																	.									.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template Sequence		I	P	V	N	K	.	.	.	.	A	S	L	A	Q	Y	E	V	L	A	N	Y	L	T	S	A	.	L	S	E	L	S	G	L	I	.	.	.	.	.	.	.	.	.	.	S	S	A	K	L	D	K	F	T	D	G	G	L	F	T	L	F	V	R	D	Q	D	S	.	.	.	.	.	.	.	.	.	A	V	V	S
Template Known Secondary structure						S	.	.	.	.	S	T													S	T	.	T		T	T	G	G	G		.	.	.	.	.	.	.	.	.	.	S								T	T											S	S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.																	.									.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template SS confidence
		243	.	.	.	.					.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.											.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.										.	.	.	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	L	N	L	L	R	E	K	G	I	D	K	Q	Y	F	D	E	L	A	N	V	L	D	I	D	F	R	Y	P	S	I	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	I	K	K	I	V	A	D	L	K	K	G	K	D	L	S	P	A	I	N	Y	T	K	L	K	N	A	V	Q	N	E	S
Template Known Secondary structure													S					S	T	T								T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions