Job Description P05458 Confidence 100.00% Date Thu Jan 5 10:58:43 GMT 2012 Rank 14 Aligned Residues 397 % Identity 15% Template c3cx5L_ PDB info PDB header:oxidoreductase Chain: L: PDB Molecule:cytochrome b-c1 complex subunit 1, mitochondrial; PDBTitle: structure of complex iii with bound cytochrome c in reduced2 state and definition of a minimal core interface for3 electron transfer. Resolution 1.90 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	I	R	L	D	N	G	M	V	V	L	L	V	S	D	P	Q	A	V	K	S	L	S	A	L	V	V	P	V	G	S	L	E	D	P	E	A	Y	Q	G	L	A	H	Y	L	E	H	M	S	L	M	G	S	K	K	Y	P	Q	A	D	S	L	A	E	Y	L	K	M	H	G	G	S	H	N	A	S	T	A	P
Query Conservation
Alig confidence																																																												.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.
Template Sequence		E	V	T	Q	L	S	N	G	I	V	V	A	T	E	H	N	P	S	A	H	T	A	S	V	G	V	V	F	G	S	G	A	A	N	E	N	P	Y	N	N	G	V	S	N	L	W	K	N	I	F	L	S	K	E	N	S	A	V	.	.	.	.	.	.	.	.	A	A	K	E	G	L	A	L	S	S	N	I	S	R
Template Known Secondary structure								S	S	S								T	T		S									S			G	G	G	S		T	T	T	T	T										T								.	.	.	.	.	.	.	.				T	T									S
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.									.	.	.	.	90	.	.	.	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																														.	.	.																							.
Query SS confidence																														.	.	.																							.
Query Sequence		Y	R	T	A	F	Y	L	E	V	E	N	D	A	L	P	G	A	V	D	R	L	A	D	A	I	A	E	P	.	.	.	L	L	D	K	K	Y	A	E	R	E	R	N	A	V	N	A	E	L	T	M	A	R	.	T	R	D	G	M	R	M	A	Q	V	S	A	E	T	I	N	P	A	H	P	G	S	K	F	S	G
Query Conservation																														.	.	.																							.
Alig confidence																														.	.	.																							.
Template Conservation
Template Sequence		D	F	Q	S	Y	I	V	S	S	L	P	G	S	T	D	K	S	L	D	F	L	N	Q	S	F	I	Q	Q	K	A	N	L	L	S	S	S	N	F	E	A	T	K	K	S	V	L	K	Q	V	Q	D	F	E	D	N	D	H	P	N	R	V	L	E	H	L	H	S	T	A	F	Q	N	T	P	L	S	L	P	T	R
Template Known Secondary structure		S										G	G	G													T	T		S	S	S	T	T																																					T	T	T	S	G	G	G	S		T	T
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	L	E	T	L	S	D	K	P	G	N	P	V	Q	Q	A	L	K	D	F	H	E	K	Y	Y	S	A	N	L	M	K	A	V	I	Y	S	N	K	P	L	P	E	L	A	K	M	A	A	D	T	F	G	R	V	P	N	K	E	S	K	K	P	E	I	T	V	P	V	V	T	D	A	Q	K	G	I	I	I	H
Query Conservation
Alig confidence												.	.	.	.																																																		.	.	.	.
Template Conservation												.	.	.	.																																																		.	.	.	.
Template Sequence		G	T	L	E	S	L	E	N	L	V	.	.	.	.	V	A	D	L	E	S	F	A	N	N	H	F	L	N	S	N	A	V	V	V	G	T	G	N	I	K	H	E	D	L	V	N	S	I	E	S	K	N	L	S	L	Q	T	G	T	K	P	V	L	.	.	.	.	K	K	K	A	A	F	L	G	S	E	V	R	L
Template Known Secondary structure								T	T			.	.	.	.												S		G	G	G								S													S				S	S								.	.	.	.
Template Predicted Secondary structure												.	.	.	.																																																		.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.					.	240	.	.	.	.	.	.	.	.	.	250	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.										320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.
Query Sequence		Y	V	P	A	L	P	R	K	V	L	R	V	E	F	R	I	D	N	N	S	A	K	F	R	S	K	T	D	E	L	I	T	Y	L	I	G	N	R	S	.	.	.	.	.	.	.	.	.	P	G	T	L	S	D	W	L	Q	K	Q	G	L	V	E	G	I	S	A	N	S	D	P	I	V	N	G	N	S	G	V	L
Query Conservation																																									.	.	.	.	.	.	.	.	.
Alig confidence																							.																		.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																							.																																																						.	.
Template Sequence		R	D	D	T	L	P	K	A	W	I	S	L	A	V	E	G	E	P	V	N	S	.	P	N	Y	F	V	A	K	L	A	A	Q	I	F	G	S	Y	N	A	F	E	P	A	S	R	L	Q	G	I	K	L	L	D	N	I	Q	E	Y	Q	L	C	D	N	F	N	H	F	S	L	S	Y	K	D	S	.	.	G	L	W
Template Known Secondary structure				T	T	S	S	S												T	T		.	T	T																T	T	S	T	T	G	G	G	S	S		T							T	T	T			S										S	S		.	.
Template Predicted Secondary structure																							.																																																						.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.			.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.		.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.															.
Query SS confidence																																																						.															.
Query Sequence		A	I	S	A	S	L	T	D	K	G	L	A	N	R	D	Q	V	V	A	A	I	F	S	Y	L	N	L	L	R	E	K	G	I	D	K	Q	Y	F	D	E	L	A	N	V	L	D	I	D	F	R	Y	P	.	S	I	T	R	D	M	D	Y	V	E	W	L	A	D	.	T	M	I	R	V	P	V	E	H	T	L	D
Query Conservation																																																						.															.
Alig confidence											.	.																				.																						.															.
Template Conservation											.	.																				.
Template Sequence		G	F	S	T	A	T	R	N	V	.	.	T	M	I	D	D	L	I	H	F	T	L	K	Q	W	N	R	L	T	I	.	S	V	T	D	T	E	V	E	R	A	K	S	L	L	K	L	Q	L	G	Q	L	Y	E	S	G	N	P	V	N	D	A	N	L	L	G	A	E	V	L	I	K	G	S	K	L	S	L	G	E
Template Known Secondary structure								S		T	.	.	T																			.	T																						S		S																	S	S
Template Predicted Secondary structure											.	.																				.
Template SS confidence
		329	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		A	V	N	I	A	D	R	Y	D	A	K	A	V	K	E	R	L	A	.	M	M	T	P	Q	N	A	R	I	W	Y	I	S	P	K	E
Query Conservation																				.
Alig confidence																				.
Template Conservation
Template Sequence		A	F	K	K	I	D	A	I	T	V	K	D	V	K	A	W	A	G	K	R	L	W	D	Q	D	I	A	I	A	G	T	G	Q	I	E
Template Known Secondary structure																						T	T	T										S		T
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440