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Job DescriptionP05458
Confidence100.00%DateThu Jan 5 10:58:43 GMT 2012
Rank4Aligned Residues883
% Identity13%Templatec2fgeA_
PDB info PDB header:hydrolase, plant proteinChain: A: PDB Molecule:zinc metalloprotease (insulinase family); PDBTitle: crystal structure of presequence protease prep from2 arabidopsis thaliana
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60.........70.........80.........90.........100.........110......
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Query Sequence  SDKDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGG
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Template Sequence  SECKSKAILFKHKKTGCEVXSVSNEDENKVFG. . . . . VVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLH
Template Known Secondary structure  TTTTTTT


S
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SSSS
TTS
BTTB
SS


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   31........40.........50.........60.. .......70.........80.........90.........100.....
 
   117 ..120.........130. ........140.........150.........160 .........170.......
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Query Sequence  S. HNASTAPYRTAFYL. EVENDALPGAVDRLADAIAEPLLDKKYAE. . . . . . . . . . . . . . . . . RERNAVNAELTMARTRD
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Template Conservation     

 
  
 
 
             
 
  
    
 
      
 

    
         
 


  
        
Template Sequence  TFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEXKGVYSQP
Template Known Secondary structure 


SSSSSBGGGTSST

S
TTS


TTS
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   106...110.........120.........130.........140.........150.........160.........170.........180.....
 
   178.180.........190.........200.........210.........220.........230.........240.........250.......
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Query Sequence  GMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPN
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Template Conservation                   
     
    
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Template Sequence  DNILGRIAQQALSPENTYGVDSGGDPKDIPNLT. . . . FEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDXFEA
Template Known Secondary structure 
TTSGGGS
TT

TTTGGG

....SSGGGSS
TT


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   186...190.........200.........210........ .220.........230.........240.........250.........260.
 
   258.260.........270.........280....... ..290......... 300.........310.........320.........330
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Query Sequence  KESKKPEITVPVVTDAQKGIIIHYVPALPR. . . . . . KVLRVEFRIDNN. SAKFRSKTDELITYLIGNRSPGTLSDWLQKQ
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Template Conservation                                                              
  

     
 
   
   
Template Sequence  SPSPNSSKIKFQKLFSEPVRLVEKYPAGRDGDLKKKHXLCVNWLLSEKPLDLQTQLALGFLDHLXLGTPASPLRKILLES
Template Known Secondary structure 
SS







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SSS
GGG


SS


SSTTST
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   262.......270.........280.........290.........300.........310.........320.........330.........340.
 
   331........340.........350.........360.........370.........380.........390.........400........
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Query Sequence  GLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRD. .
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Template Sequence  GLGEALVSSGLSDELL. QPQFGIGLKGVSE. . ENVQKVEELIXDTLKKLAEEGFDNDAVEASXNTIEFSLRENNTGSFPR
Template Known Secondary structure  TS
S
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SSS.S

G..GG





TTS
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   342.......350....... ..360.........370 .........380.........390.........400.........410........
 
   409410.........420.........430.........440.... .....450.........460..... ....470.....
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Query Sequence  . . MDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKE. . . . . . . . . RLAMMTPQNARIWYISPKEPH. . NKTAYFVDAP
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Template Conservation                       
        
               
           
 
   
               
Template Sequence  GLSLXLQSISKWIYDXDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEXQPDPEKATQEEVEEKNI
Template Known Secondary structure  TTTS
SSGGG


TTT


TT
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   419420.........430.........440.........450.........460.........470.........480.........490........
 
   476...480.........490.........500.........510..... ....520.........530.........540........
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Query Sequence  YQVDKISAQTFADWQKKAADIALSLPELNPYIPDDFSLIK. . . . . . . SEKKYDHPELIVDESNLRVVYAPSRYFASEPKA
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Template Conservation 
                                      
                     

  
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Template Sequence  LEKVKAAXTEEDLAELARATEELKLKQETPDPPEALRCVPSLNLGDIPKEPTYVPTEVGDINGVKVLRHDLFT. NDIIYT
Template Known Secondary structure  TS
TS


TTS



GGGS
SS





SSSS


.SS
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   499500.........510.........520.........530.........540.........550.........560.........570. ......
 
   549550.........560.........570.........580.........590.........600. ........610.....
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Query Sequence  DVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNANNG. . . . . . . . . . . . . LMVNANGYTQRLPQ
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Template Conservation                  
 
    
   

   
   
   
       
                   
           
Template Sequence  EVVFDIGSLKHELLPLVPLFCQSLLEXGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVRGKSXAGRADD
Template Known Secondary structure 
TTS
TTTGGGS

SSS
SSTTGGG
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   578.580.........590.........600.........610.........620.........630.........640.........650.......
 
   616...620......... 630.........640.........650.........660.........670 .........
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Query Sequence  LFQALLEGYFSYTA. TEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYF. . . . . . . . . . . . . . . SRDERRKIL
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Template Conservation   
 

   
    
 
 
    
                   
                   
         
       
Template Sequence  LFNLXNCLLQEVQFTDQQRFKQFVSQSRARXENRLRGSGHGIAAARXDAXLNIAGWXSEQXGGLSYLEFLHTLEKKVDED
Template Known Secondary structure 

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   658.660.........670.........680.........690.........700.........710.........720.........730.......
 
   680.........690.........700.........710 .........720.........730.........740.........750........
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Query Sequence  PSITLKEVLAYRDALKSGARPEFMVIGNMTE. AQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNSTDSAL
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Template Sequence  WEGISSSLEEIRRSLLARNGCIVNXTADGKSLTNVEKSVAKFLDLLPENPSGGLVTWDGRLPLRNEAIV. . . . IPTQVNY
Template Known Secondary structure 

STT

TS
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SSB
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   738.740.........750.........760.........770.........780.........790.........800...... ...810...
 
   759760.........770.........780... ......790.........800.........810.........820.........830.......
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Query Sequence  AAVFVPTGYDEYTSSAYSSLLGQIV. QPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFP
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Template Sequence  VGKAGNIYSTGYELDGSAYVISKHISNTWLWDRVRVS. GGAYGGFCDFDSHSGVFSYLSYRDP. . . NLLKTLDIYDGTGD
Template Known Secondary structure  GGGGT



TTTTTT.T

STTTTSBS...
ST
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   814.....820.........830.........840.........850 .........860.........870..... ....880.........
 
   838.840.........850.........860.........870.........880.........890.........900.........910.......
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Query Sequence  TAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQ
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Template Sequence  FLRG. . LDVDQETLTKAIIGTIGDV. DSYQLPDAKGYSSLLRHLLG. VTDEERQRKREEILTTSLKDFKDFAQAIDVVRD
Template Known Secondary structure  T..



.T



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   890... ......900.........910.. .......920.........930.. .......940.........950.........960.....
 
   918.920.........930.........940.....
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Query Sequence  GMAILSQISGSQNGKAEYVHPEGWKVWE
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Template Conservation      

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Template Sequence  KGVAVA. VASAEDIDAANNERSNFFEVK
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TTT
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   966...970. ........980.........990..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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