Job Description P05458 Confidence 100.00% Date Thu Jan 5 10:58:43 GMT 2012 Rank 1 Aligned Residues 937 % Identity 100% Template c1q2lA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:protease iii; PDBTitle: crystal structure of pitrilysin Resolution 2.20 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	G	W	Q	P	I	Q	E	T	I	R	K	S	D	K	D	N	R	Q	Y	Q	A	I	R	L	D	N	G	M	V	V	L	L	V	S	D	P	Q	A	V	K	S	L	S	A	L	V	V	P	V	G	S	L	E	D	P	E	A	Y	Q	G	L	A	H	Y	L	E	H	M	S	L	M	G	S	K	K	Y	P	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	G	W	Q	P	I	Q	E	T	I	R	K	S	D	K	D	N	R	Q	Y	Q	A	I	R	L	D	N	G	M	V	V	L	L	V	S	D	P	Q	A	V	K	S	L	S	A	L	V	V	P	V	G	S	L	E	D	P	E	A	Y	Q	G	L	A	H	Y	L	E	H	M	S	L	M	G	S	K	K	Y	P	Q
Template Known Secondary structure										S						T	T											T	T	S									T	T		S	S								S			G	G	G			G	G	G	T	T									T	T	S		B	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	S	L	A	E	Y	L	K	M	H	G	G	S	H	N	A	S	T	A	P	Y	R	T	A	F	Y	L	E	V	E	N	D	A	L	P	G	A	V	D	R	L	A	D	A	I	A	E	P	L	L	D	K	K	Y	A	E	R	E	R	N	A	V	N	A	E	L	T	M	A	R	T	R	D	G	M	R	M	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	S	L	A	E	Y	L	K	M	H	G	G	S	H	N	A	S	T	A	P	Y	R	T	A	F	Y	L	E	V	E	N	D	A	L	P	G	A	V	D	R	L	A	D	A	I	A	E	P	L	L	D	K	K	Y	A	E	R	E	R	N	A	V	N	A	E	L	T	M	A	R	T	R	D	G	M	R	M	A	Q
Template Known Secondary structure		T	T								T	T	T									S	S										G	G	G															B				S	T	T																T	T	S
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	A	E	T	I	N	P	A	H	P	G	S	K	F	S	G	G	N	L	E	T	L	S	D	K	P	G	N	P	V	Q	Q	A	L	K	D	F	H	E	K	Y	Y	S	A	N	L	M	K	A	V	I	Y	S	N	K	P	L	P	E	L	A	K	M	A	A	D	T	F	G	R	V	P	N	K	E	S	K	K	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	A	E	T	I	N	P	A	H	P	G	S	K	F	S	G	G	N	L	E	T	L	S	D	K	P	G	N	P	V	Q	Q	A	L	K	D	F	H	E	K	Y	Y	S	A	N	L	M	K	A	V	I	Y	S	N	K	P	L	P	E	L	A	K	M	A	A	D	T	F	G	R	V	P	N	K	E	S	K	K	P
Template Known Secondary structure						S	S		T	T	S	G	G	G	S			S							S		B	T	T	B																T	T	T								S	S												T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	T	V	P	V	V	T	D	A	Q	K	G	I	I	I	H	Y	V	P	A	L	P	R	K	V	L	R	V	E	F	R	I	D	N	N	S	A	K	F	R	S	K	T	D	E	L	I	T	Y	L	I	G	N	R	S	P	G	T	L	S	D	W	L	Q	K	Q	G	L	V	E	G	I	S	A	N	S	D	P	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	T	V	P	V	V	T	D	A	Q	K	G	I	I	I	H	Y	V	P	A	L	P	R	K	V	L	R	V	E	F	R	I	D	N	N	S	A	K	F	R	S	K	T	D	E	L	I	T	Y	L	I	G	N	R	S	P	G	T	L	S	D	W	L	Q	K	Q	G	L	V	E	G	I	S	A	N	S	D	P	I
Template Known Secondary structure					S		S			G	G	G	S	S								S	S															G	G	G	G	G	G															T	T	S								T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	G	N	S	G	V	L	A	I	S	A	S	L	T	D	K	G	L	A	N	R	D	Q	V	V	A	A	I	F	S	Y	L	N	L	L	R	E	K	G	I	D	K	Q	Y	F	D	E	L	A	N	V	L	D	I	D	F	R	Y	P	S	I	T	R	D	M	D	Y	V	E	W	L	A	D	T	M	I	R	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	N	G	N	S	G	V	L	A	I	S	A	S	L	T	D	K	G	L	A	N	R	D	Q	V	V	A	A	I	F	S	Y	L	N	L	L	R	E	K	G	I	D	K	Q	Y	F	D	E	L	A	N	V	L	D	I	D	F	R	Y	P	S	I	T	R	D	M	D	Y	V	E	W	L	A	D	T	M	I	R	V	P
Template Known Secondary structure		T	T	S	S																	T																																						S						S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	H	T	L	D	A	V	N	I	A	D	R	Y	D	A	K	A	V	K	E	R	L	A	M	M	T	P	Q	N	A	R	I	W	Y	I	S	P	K	E	P	H	N	K	T	A	Y	F	V	D	A	P	Y	Q	V	D	K	I	S	A	Q	T	F	A	D	W	Q	K	K	A	A	D	I	A	L	S	L	P	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	H	T	L	D	A	V	N	I	A	D	R	Y	D	A	K	A	V	K	E	R	L	A	M	M	T	P	Q	N	A	R	I	W	Y	I	S	P	K	E	P	H	N	K	T	A	Y	F	V	D	A	P	Y	Q	V	D	K	I	S	A	Q	T	F	A	D	W	Q	K	K	A	A	D	I	A	L	S	L	P	E	L
Template Known Secondary structure		G	G	G	T	T	T	T	T	T																		S	G	G	G								T	T								T	T	T																							T
Template Predicted Secondary structure
Template SS confidence
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	Y	I	P	D	D	F	S	L	I	K	S	E	K	K	Y	D	H	P	E	L	I	V	D	E	S	N	L	R	V	V	Y	A	P	S	R	Y	F	A	S	E	P	K	A	D	V	S	L	I	L	R	N	P	K	A	M	D	S	A	R	N	Q	V	M	F	A	L	N	D	Y	L	A	G	L	A	L	D	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	P	Y	I	P	D	D	F	S	L	I	K	S	E	K	K	Y	D	H	P	E	L	I	V	D	E	S	N	L	R	V	V	Y	A	P	S	R	Y	F	A	S	E	P	K	A	D	V	S	L	I	L	R	N	P	K	A	M	D	S	A	R	N	Q	V	M	F	A	L	N	D	Y	L	A	G	L	A	L	D	Q	L
Template Known Secondary structure			T	T											S	S			S	S								T	T									S	S		T	T	S	S											G	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
		584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	Q	A	S	V	G	G	I	S	F	S	T	N	A	N	N	G	L	M	V	N	A	N	G	Y	T	Q	R	L	P	Q	L	F	Q	A	L	L	E	G	Y	F	S	Y	T	A	T	E	D	Q	L	E	Q	A	K	S	W	Y	N	Q	M	M	D	S	A	E	K	G	K	A	F	E	Q	A	I	M	P	A	Q	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	Q	A	S	V	G	G	I	S	F	S	T	N	A	N	N	G	L	M	V	N	A	N	G	Y	T	Q	R	L	P	Q	L	F	Q	A	L	L	E	G	Y	F	S	Y	T	A	T	E	D	Q	L	E	Q	A	K	S	W	Y	N	Q	M	M	D	S	A	E	K	G	K	A	F	E	Q	A	I	M	P	A	Q	M
Template Known Secondary structure								T	T								S	S										S	S	S																			S																		S		S
Template Predicted Secondary structure
Template SS confidence
		584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.
		664	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	Q	V	P	Y	F	S	R	D	E	R	R	K	I	L	P	S	I	T	L	K	E	V	L	A	Y	R	D	A	L	K	S	G	A	R	P	E	F	M	V	I	G	N	M	T	E	A	Q	A	T	T	L	A	R	D	V	Q	K	Q	L	G	A	D	G	S	E	W	C	R	N	K	D	V	V	V	D	K	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	Q	V	P	Y	F	S	R	D	E	R	R	K	I	L	P	S	I	T	L	K	E	V	L	A	Y	R	D	A	L	K	S	G	A	R	P	E	F	M	V	I	G	N	M	T	E	A	Q	A	T	T	L	A	R	D	V	Q	K	Q	L	G	A	D	G	S	E	W	C	R	N	K	D	V	V	V	D	K	K	Q
Template Known Secondary structure		T	T	S	S	S											G	G	G															T	T										S																		T				S												S
Template Predicted Secondary structure
Template SS confidence
		664	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.
		744	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	I	F	E	K	A	G	N	S	T	D	S	A	L	A	A	V	F	V	P	T	G	Y	D	E	Y	T	S	S	A	Y	S	S	L	L	G	Q	I	V	Q	P	W	F	Y	N	Q	L	R	T	E	E	Q	L	G	Y	A	V	F	A	F	P	M	S	V	G	R	Q	W	G	M	G	F	L	L	Q	S	N	D	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	I	F	E	K	A	G	N	S	T	D	S	A	L	A	A	V	F	V	P	T	G	Y	D	E	Y	T	S	S	A	Y	S	S	L	L	G	Q	I	V	Q	P	W	F	Y	N	Q	L	R	T	E	E	Q	L	G	Y	A	V	F	A	F	P	M	S	V	G	R	Q	W	G	M	G	F	L	L	Q	S	N	D	K
Template Known Secondary structure										S	S	S											S	S																						T					T	S			S	S	S										T	T											S	S	S
Template Predicted Secondary structure
Template SS confidence
		744	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.
		824	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	S	F	L	W	E	R	Y	K	A	F	F	P	T	A	E	A	K	L	R	A	M	K	P	D	E	F	A	Q	I	Q	Q	A	V	I	T	Q	M	L	Q	A	P	Q	T	L	G	E	E	A	S	K	L	S	K	D	F	D	R	G	N	M	R	F	D	S	R	D	K	I	V	A	Q	I	K	L	L	T	P	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	P	S	F	L	W	E	R	Y	K	A	F	F	P	T	A	E	A	K	L	R	A	M	K	P	D	E	F	A	Q	I	Q	Q	A	V	I	T	Q	M	L	Q	A	P	Q	T	L	G	E	E	A	S	K	L	S	K	D	F	D	R	G	N	M	R	F	D	S	R	D	K	I	V	A	Q	I	K	L	L	T	P	Q
Template Known Secondary structure																							T																		T				S	S															T		T	T													T
Template Predicted Secondary structure
Template SS confidence
		824	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.
		904	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	A	D	F	F	H	Q	A	V	V	E	P	Q	G	M	A	I	L	S	Q	I	S	G	S	Q	N	G	K	A	E	Y	V	H	P	E	G	W	K	V	W	E	N	V	S	A	L	Q	Q	T	M	P	L	M	S	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	A	D	F	F	H	Q	A	V	V	E	P	Q	G	M	A	I	L	S	Q	I	S	G	S	Q	N	G	K	A	E	Y	V	H	P	E	G	W	K	V	W	E	N	V	S	A	L	Q	Q	T	M	P	L	M	S	E	K
Template Known Secondary structure											T	T	S		S	S										S	S										T	T					S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		904	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960