Job Description P05458 Confidence 100.00% Date Thu Jan 5 10:58:43 GMT 2012 Rank 9 Aligned Residues 405 % Identity 17% Template c1nu1A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ubiquinol-cytochrome c reductase complex core protein i, PDBTitle: crystal structure of mitochondrial cytochrome bc1 complexed with 2-2 nonyl-4-hydroxyquinoline n-oxide (nqno) Resolution 3.20 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	Q	A	I	R	L	D	N	G	M	V	V	L	L	V	S	D	P	Q	A	V	K	S	L	S	A	L	V	V	P	V	G	S	L	E	D	P	E	A	Y	Q	G	L	A	H	Y	L	E	H	M	S	L	M	G	S	K	K	Y	P	Q	A	D	S	L	A	E	Y	L	K	M	H	G	G	S	H	N	A	S	T
Query Conservation
Alig confidence															.																																																.
Template Conservation															.																																																.
Template Sequence		E	T	Q	V	S	Q	L	D	N	G	L	R	V	.	A	S	E	Q	S	S	Q	P	T	C	T	V	G	V	W	I	D	A	G	S	R	Y	E	S	E	K	N	N	G	A	G	Y	F	V	E	H	L	A	F	K	G	T	K	N	R	P	G	.	N	A	L	E	K	E	V	E	S	M	G	A	H	L	N	A	Y	S
Template Known Secondary structure									T	T	S				.				B		S		S									S			S	T	T	S		T	T	T	T	T									T	T	S		B	S	S	S		T	.	T									T	T
Template Predicted Secondary structure															.																																																.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	Y	R	T	A	F	Y	L	E	V	E	N	D	A	L	P	G	A	V	D	R	L	A	D	A	I	A	E	P	L	L	D	K	K	Y	A	E	R	E	R	N	A	V	N	A	E	L	T	M	A	R	T	R	D	G	M	R	M	A	Q	V	S	A	E	T	I	N	P	A	H	P	G	S	K	F	S	G	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	R	E	H	T	A	Y	Y	I	K	A	L	S	K	D	L	P	K	A	V	E	L	L	A	D	I	V	Q	N	C	S	L	E	D	S	Q	I	E	K	E	R	D	V	I	L	Q	E	L	Q	E	N	D	T	S	M	R	D	V	V	F	N	Y	L	H	A	T	A	F	Q	G	T	P	L	A	Q	S	V	E	G	P
Template Known Secondary structure			S	S										G	G	G															B																						T	T															T	T	T	S	G	G	G	S		S	S
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	T	L	S	D	K	P	G	N	P	V	Q	Q	A	L	K	D	F	H	E	K	Y	Y	S	A	N	L	M	K	A	V	I	Y	S	N	K	P	L	P	E	L	A	K	M	A	A	D	T	F	G	R	V	P	N	K	E	S	K	K	P	E	I	T	V	P	V	V	T	D	A	Q	K	G	I	I	I	H	Y	V
Query Conservation
Alig confidence										.	.	.	.																																																																		.
Template Conservation										.	.	.	.																																																																		.
Template Sequence		S	E	N	V	R	K	L	S	.	.	.	.	R	A	D	L	T	E	Y	L	S	R	H	Y	K	A	P	R	M	V	L	A	A	A	G	G	L	E	H	R	Q	L	L	D	L	A	Q	K	H	F	S	G	L	S	G	T	Y	D	E	D	A	V	P	T	L	S	P	C	R	F	T	G	S	Q	I	C	H	.	R	E
Template Known Secondary structure										.	.	.	.														G	G	G							B	S																S	S	G	G	G			S	S	S																	.
Template Predicted Secondary structure										.	.	.	.																																																																		.
Template SS confidence
		171	.	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.									.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.															.
Query SS confidence																																			.	.	.	.	.	.	.	.															.
Query Sequence		P	A	L	P	R	K	V	L	R	V	E	F	R	I	D	N	N	S	A	K	F	R	S	K	T	D	E	L	I	T	Y	L	I	.	.	.	.	.	.	.	.	G	N	R	S	P	G	T	L	S	D	W	L	Q	K	.	Q	G	L	V	E	G	I	S	A	N	S	D	P	I	V	N	G	N	S	G	V	L	A	I
Query Conservation																																			.	.	.	.	.	.	.	.															.
Alig confidence																					.														.	.	.	.	.	.	.	.															.																		.	.
Template Conservation																					.																																																						.	.
Template Sequence		D	G	L	P	L	A	H	V	A	I	A	V	E	G	P	G	W	A	H	.	P	D	N	V	A	L	Q	V	A	N	A	I	I	G	H	Y	D	C	T	Y	G	G	G	A	H	L	S	S	P	L	A	S	I	A	A	T	N	K	L	C	Q	S	F	Q	T	F	N	I	C	Y	A	D	T	.	.	G	L	L	G	A
Template Known Secondary structure		T	T	S	S	S												T	T		.	T																	T	T		S		S	T	T		S	S										T			S										T	T		.	.
Template Predicted Secondary structure																					.																																																						.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.			.	.	320	.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	S	L	T	D	K	G	L	A	N	R	D	Q	V	V	A	A	I	F	S	Y	L	N	L	L	R	E	K	G	I	D	K	Q	Y	F	D	E	L	A	N	V	L	D	I	D	F	R	Y	P	S	I	T	R	D	M	D	Y	V	E	W	L	A	D	T	M	I	R	V	P	V	E	H	T	L	D	A	V	N	I
Query Conservation
Alig confidence									.	.	.																			.
Template Conservation									.	.	.																			.
Template Sequence		H	F	V	C	D	H	M	.	.	.	S	I	D	D	M	M	F	V	L	Q	G	Q	W	M	R	L	C	T	.	S	A	T	E	S	E	V	L	R	G	K	N	L	L	R	N	A	L	V	S	H	L	D	G	T	T	P	V	C	E	D	I	G	R	S	L	L	T	Y	G	R	R	I	P	L	A	E	W	E	S	R
Template Known Secondary structure							T	T	.	.	.																			.																						S		S																S	S
Template Predicted Secondary structure									.	.	.																			.
Template SS confidence
		323	.	.	.	.	.	.				330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		434	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		A	D	R	Y	D	A	K	A	V	K	E	R	L	A	.	M	M	T	P	Q	N	A	R	I	W	Y	I	S	P
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence		I	A	E	V	D	A	R	V	V	R	E	V	C	S	K	Y	F	Y	D	Q	C	P	A	V	A	G	F	G	P
Template Known Secondary structure																			T	T										S
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.