Job Description P05458 Confidence 100.00% Date Thu Jan 5 10:58:43 GMT 2012 Rank 13 Aligned Residues 403 % Identity 11% Template c1l0lB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase complex core protein 2; PDBTitle: structure of bovine mitochondrial cytochrome bc1 complex with a bound2 fungicide famoxadone Resolution 2.35 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	D	N	R	Q	Y	Q	A	I	R	L	D	N	G	M	V	V	L	L	V	S	D	P	Q	A	V	K	S	L	S	A	L	V	V	P	V	G	S	L	E	D	P	E	A	Y	Q	G	L	A	H	Y	L	E	H	M	S	L	M	G	S	K	K	Y	P	Q	A	D	S	L	A	E	Y	L	K	M	H	G	G	S
Query Conservation
Alig confidence																										.																																									.
Template Conservation																										.																																									.
Template Sequence		P	P	H	P	Q	D	L	E	F	T	R	L	P	N	G	L	V	I	A	S	L	E	N	Y	.	A	P	A	S	R	I	G	L	F	I	K	A	G	S	R	Y	E	N	S	N	N	L	G	T	S	H	L	L	R	L	A	S	S	L	T	T	K	G	A	S	.	S	F	K	I	T	R	G	I	E	A	V	G	G	K
Template Known Secondary structure														T	T	S										.		S									S		S	G	G	G			T	T	S	T	T								T	T	T	S		B	T	T	B		.											T	T
Template Predicted Secondary structure																										.																																									.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	N	A	S	T	A	P	Y	R	T	A	F	Y	L	E	V	E	N	D	A	L	P	G	A	V	D	R	L	A	D	A	I	A	E	P	L	L	D	K	K	Y	A	E	R	E	R	N	A	V	N	A	E	L	T	M	A	R	T	R	D	G	M	R	M	A	Q	V	S	A	E	T	I	N	P	A	H	P	G	S	K
Query Conservation
Alig confidence																																																																											.
Template Conservation																																																																											.
Template Sequence		L	S	V	T	S	T	R	E	N	M	A	Y	T	V	E	C	L	R	D	D	V	D	I	L	M	E	F	L	L	N	V	T	T	A	P	E	F	R	R	W	E	V	A	A	L	Q	P	Q	L	R	I	D	K	A	V	A	L	Q	N	P	Q	A	H	V	I	E	N	L	H	A	A	A	Y	.	R	N	A	L	A	N
Template Known Secondary structure								S	S										G	G	G															B																						T	T	S														B	.	S	S	G	G	G	S
Template Predicted Secondary structure																																																																											.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	G	G	N	L	E	T	L	S	D	K	P	G	N	P	V	Q	Q	A	L	K	D	F	H	E	K	Y	Y	S	A	N	L	M	K	A	V	I	Y	S	N	K	P	L	P	E	L	A	K	M	A	A	D	T	F	G	R	V	P	N	K	E	S	K	K	P	E	I	T	V	P	V	V	T	D	A	Q	K	G	I
Query Conservation
Alig confidence															.	.	.	.																									.																															.	.	.	.	.	.	.
Template Conservation															.	.	.	.																									.																															.	.	.	.	.	.	.
Template Sequence		S	L	Y	C	P	D	Y	R	I	G	K	V	T	.	.	.	.	P	V	E	L	H	D	Y	V	Q	N	H	F	T	S	A	R	M	A	L	I	G	L	G	V	.	S	H	P	V	L	K	Q	V	A	E	Q	F	L	N	I	R	G	G	L	G	L	S	G	A	K	A	K	Y	H	G	.	.	.	.	.	.	.	G
Template Known Secondary structure			S	S			G	G	G	T	T	T			.	.	.	.												S	S	G	G	G							S	S	.																		S			S		T	T				B			.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.																									.																															.	.	.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.								.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.									320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.										.
Query SS confidence																																												.	.	.	.	.	.	.	.										.
Query Sequence		I	I	H	Y	V	P	A	L	P	R	K	V	L	R	V	E	F	R	I	D	N	N	S	A	K	F	R	S	K	T	D	E	L	I	T	Y	L	I	G	N	R	S	.	.	.	.	.	.	.	.	P	G	T	L	S	D	W	L	Q	.	K	Q	G	L	V	E	G	I	S	A	N	S	D	P	I	V	N	G	N	S
Query Conservation																																												.	.	.	.	.	.	.	.										.
Alig confidence																										.																		.	.	.	.	.	.	.	.										.																			.	.
Template Conservation																										.																																																						.	.
Template Sequence		E	I	R	E	Q	N	G	D	S	L	V	H	A	A	L	V	A	E	S	A	A	I	G	S	.	A	E	A	N	A	F	S	V	L	Q	H	V	L	G	A	G	P	H	V	K	R	G	S	N	A	T	S	S	L	Y	Q	A	V	A	K	G	V	H	Q	P	F	D	V	S	A	F	N	A	S	Y	S	D	S	.	.
Template Known Secondary structure										S													T	T	S	.																S		S	S	T	T				T	T													S	S											S	S		.	.
Template Predicted Secondary structure																										.																																																						.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	L	A	I	S	A	S	L	T	D	K	G	L	A	N	R	D	Q	V	V	A	A	I	F	S	Y	L	N	L	L	R	E	K	G	I	D	K	Q	Y	F	D	E	L	A	N	V	L	D	I	D	F	R	Y	P	S	I	T	R	D	M	D	Y	V	E	W	L	A	D	T	M	I	R	V	P	V	E	H	T	L
Query Conservation
Alig confidence														.	.	.
Template Conservation														.	.	.
Template Sequence		G	L	F	G	F	Y	T	I	S	Q	A	A	.	.	.	S	A	G	D	V	I	K	A	A	Y	N	Q	V	K	T	I	A	Q	G	N	L	S	N	P	D	V	Q	A	A	K	N	K	L	K	A	G	Y	L	M	S	V	E	S	S	E	G	F	L	D	E	V	G	S	Q	A	L	A	A	G	S	Y	T	P	P	S
Template Known Secondary structure												G	G	.	.	.	G																	T	T																						T	S	S																S	S
Template Predicted Secondary structure														.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.				.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	V	N	I	A	D	R	Y	D	A	K	A	V	K	E	R	L	A	M	M	T	P	Q	N	A	R	I	W	Y	I	S	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	L	Q	Q	I	D	A	V	A	D	A	D	V	I	N	A	A	K	K	F	V	S	G	R	K	S	M	A	A	S	G	N
Template Known Secondary structure									T																S
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.