Job Description P05458 Confidence 100.00% Date Thu Jan 5 10:58:43 GMT 2012 Rank 5 Aligned Residues 410 % Identity 17% Template c1hr9D_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:mitochondrial processing peptidase beta subunit; PDBTitle: yeast mitochondrial processing peptidase beta-e73q mutant2 complexed with malate dehydrogenase signal peptide Resolution 3.01 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	Q	A	I	R	L	D	N	G	M	V	V	L	L	V	S	D	P	Q	A	V	K	S	L	S	A	L	V	V	P	V	G	S	L	E	D	P	E	A	Y	Q	G	L	A	H	Y	L	E	H	M	S	L	M	G	S	K	K	Y	P	Q	A	D	S	L	A	E	Y	L	K	M	H	G	G	S	H	N	A	S	T
Query Conservation
Alig confidence																																																														.
Template Conservation																																																														.
Template Sequence		G	T	R	T	S	K	L	P	N	G	L	T	I	A	T	E	Y	I	P	N	T	S	S	A	T	V	G	I	F	V	D	A	G	S	R	A	E	N	V	K	N	N	G	T	A	H	F	L	Q	H	L	A	F	K	G	T	Q	N	R	P	.	Q	Q	G	I	E	L	E	I	E	N	I	G	S	H	L	N	A	Y	T
Template Known Secondary structure									T	T	S									S	S		S									S		S	G	G	G	S		T	T	T	T	T									G	G	G	B	B	S	S	S	B	.												T
Template Predicted Secondary structure																																																														.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	Y	R	T	A	F	Y	L	E	V	E	N	D	A	L	P	G	A	V	D	R	L	A	D	A	I	A	E	P	L	L	D	K	K	Y	A	E	R	E	R	N	A	V	N	A	E	L	T	M	A	R	T	R	D	G	M	R	M	A	Q	V	S	A	E	T	I	N	P	A	H	P	G	S	K	F	S	G	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R	E	N	T	V	Y	Y	A	K	S	L	Q	E	D	I	P	K	A	V	D	I	L	S	D	I	L	T	K	S	V	L	D	N	S	A	I	E	R	E	R	D	V	I	I	R	E	S	E	E	V	D	K	M	Y	D	E	V	V	F	D	H	L	H	E	I	T	Y	K	D	Q	P	L	G	R	T	I	L	G	P
Template Known Secondary structure			S	S										G	G	G													S	S	B				T	T																	T	T															T	T	T	S	T	T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		L	E	T	L	S	D	K	P	G	N	P	V	Q	Q	A	L	K	D	F	H	E	K	Y	Y	S	A	N	L	M	K	A	V	I	Y	S	N	K	P	L	P	E	L	A	K	M	A	A	D	T	F	G	R	V	P	N	K	E	S	K	K	P	E	.	I	T	V	P	V	V	T	D	A	Q	K	G	I	I	I	H	Y
Query Conservation																																																																.
Alig confidence										.	.	.	.																																																			.
Template Conservation										.	.	.	.
Template Sequence		I	K	N	I	K	S	I	T	.	.	.	.	R	T	D	L	K	D	Y	I	T	K	N	Y	K	G	D	R	M	V	L	A	G	A	G	A	V	D	H	E	K	L	V	Q	Y	A	Q	K	Y	F	G	H	V	P	K	S	E	S	P	V	P	L	G	S	P	R	G	P	L	P	V	F	C	R	G	E	R	F	I	K
Template Known Secondary structure										.	.	.	.														G	G	G								S															T	T	S				S	S				T	T	S			S	S
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.					.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.										.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.															.
Query SS confidence																																					.	.	.	.	.	.	.	.	.															.
Query Sequence		V	P	A	L	P	R	K	V	L	R	V	E	F	R	I	D	N	N	S	A	K	F	R	S	K	T	D	E	L	I	T	Y	L	I	G	.	.	.	.	.	.	.	.	.	N	R	S	P	G	T	L	S	D	W	L	Q	K	Q	.	G	L	V	E	G	I	S	A	N	S	D	P	I	V	N	G	N	S	G	V	L
Query Conservation																																					.	.	.	.	.	.	.	.	.															.
Alig confidence																						.															.	.	.	.	.	.	.	.	.															.
Template Conservation																						.
Template Sequence		E	N	T	L	P	T	T	H	I	A	I	A	L	E	G	V	S	W	S	A	.	P	D	Y	F	V	A	L	A	T	Q	A	I	V	G	N	W	D	R	A	I	G	T	G	T	N	S	P	S	P	L	A	V	A	A	S	Q	N	G	S	L	A	N	S	Y	M	S	F	S	T	S	Y	A	D	S	G	L	W	G	M
Template Known Secondary structure			T	T		S													T	T		.	T	T																T	T	T	B		S	S	S	S										S	T	T		S		S										S	S
Template Predicted Secondary structure																						.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	S	A	S	L	T	D	K	G	L	A	N	R	D	Q	V	V	A	A	I	F	S	Y	L	N	L	L	R	E	K	G	I	D	K	Q	Y	F	D	E	L	A	N	V	L	D	I	D	F	R	Y	P	S	I	T	R	D	M	D	Y	V	E	W	L	A	D	T	M	I	R	V	P	V	E	H	T	L	D	A	V
Query Conservation
Alig confidence											.	.	.
Template Conservation											.	.	.
Template Sequence		Y	I	V	T	D	S	N	E	H	.	.	.	N	V	R	L	I	V	N	E	I	L	K	E	W	K	R	I	K	S	G	K	I	S	D	A	E	V	N	R	A	K	A	Q	L	K	A	A	L	L	L	S	L	D	G	S	T	A	I	V	E	D	I	G	R	Q	V	V	T	T	G	K	R	L	S	P	E	E	V	F
Template Known Secondary structure							T	T	T		.	.	.																		T	T																				T	T			S																S	S
Template Predicted Secondary structure											.	.	.
Template SS confidence
		339	340	.	.	.	.	.	.	.				.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		N	I	A	D	R	Y	D	A	K	A	V	K	E	R	L	A	.	M	M	T	P	Q	N	A	R	I	W	Y	I	S	P
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		E	Q	V	D	K	I	T	K	D	D	I	I	M	W	A	N	Y	R	L	Q	N	K	P	V	S	M	V	A	L	G	N
Template Known Secondary structure						T														S	S	S
Template Predicted Secondary structure
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.