Job Description P05458 Confidence 100.00% Date Thu Jan 5 10:58:43 GMT 2012 Rank 11 Aligned Residues 411 % Identity 12% Template c1hr6C_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:mitochondrial processing peptidase alpha subunit; PDBTitle: yeast mitochondrial processing peptidase Resolution 2.50 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	Q	Y	Q	A	I	R	L	D	N	G	M	V	V	L	L	V	S	D	P	Q	A	V	K	S	L	S	A	L	V	V	P	V	G	S	L	E	D	P	E	A	Y	Q	G	L	A	H	Y	L	E	H	M	S	L	M	G	S	K	K	Y	P	Q	A	D	S	L	A	E	Y	L	K	M	H	G	G	S	H	N	A
Query Conservation
Alig confidence																								.																																								.
Template Conservation																								.																																								.
Template Sequence		T	D	N	F	K	L	S	S	L	A	N	G	L	K	V	A	T	S	N	T	P	G	.	H	F	S	A	L	G	L	Y	I	D	A	G	S	R	F	E	G	R	N	L	K	G	C	T	H	I	L	D	R	L	A	F	K	S	T	E	H	V	E	.	G	R	A	M	A	E	T	L	E	L	L	G	G	N	Y	Q	C
Template Known Secondary structure											T	T	S							S				.	S	S								S			G	G	G		T	T	T	T	T	T									T	T	S		B	S	S	S		.											T	T	S
Template Predicted Secondary structure																								.																																								.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	A	P	Y	R	T	A	F	Y	L	E	V	E	N	D	A	L	P	G	A	V	D	R	L	A	D	A	I	A	E	P	L	L	D	K	K	Y	A	E	R	E	R	N	A	V	N	A	E	L	T	M	A	R	T	R	D	G	M	R	M	A	Q	V	S	A	E	T	I	N	P	A	H	P	G	S	K	F	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	S	R	E	N	L	M	Y	Q	A	S	V	F	N	Q	D	V	G	K	M	L	Q	L	M	S	E	T	V	R	F	P	K	I	T	E	Q	E	L	Q	E	Q	K	L	S	A	E	Y	E	I	D	E	V	W	M	K	P	E	L	V	L	P	E	L	L	H	T	A	A	Y	S	G	E	T	L	G	S	P	L	I
Template Known Secondary structure					S	S										G	G	G															B																						T	T															T	T	T	S	G	G	G	S		S	S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		G	N	L	E	T	L	S	D	K	P	G	N	P	V	Q	Q	A	L	K	D	F	H	E	K	Y	Y	S	A	N	L	M	K	A	V	I	Y	S	N	K	P	L	P	E	L	A	K	M	A	A	D	T	F	G	R	V	P	N	K	E	S	K	K	P	E	I	T	V	P	V	V	.	T	D	A	Q	K	G	I	I	I
Query Conservation																																																																								.
Alig confidence												.	.	.	.																											.																														.
Template Conservation												.	.	.	.																											.
Template Sequence		C	P	R	G	L	I	P	S	I	S	.	.	.	.	K	Y	Y	L	L	D	Y	R	N	K	F	Y	T	P	E	N	T	V	A	A	F	V	G	V	P	H	.	E	K	A	L	E	L	T	G	K	Y	L	G	D	W	Q	S	T	H	P	P	I	T	K	K	V	A	Q	Y	T	G	G	E	S	C	I	P	P	A	P
Template Known Secondary structure				G	G	G	G	G	G			.	.	.	.														G	G	G							S	S			.												T	T
Template Predicted Secondary structure												.	.	.	.																											.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.					.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.												320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.										.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.										.
Query Sequence		H	Y	V	P	A	L	P	R	K	V	L	R	V	E	F	R	I	D	N	N	S	A	K	F	R	S	K	T	D	E	L	I	T	Y	L	I	G	N	R	S	.	.	.	.	.	.	.	.	.	.	.	P	G	T	L	S	D	W	L	Q	.	K	Q	G	L	V	E	G	I	S	A	N	S	D	P	I	V	N	G	N
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.										.
Alig confidence																								.																		.	.	.	.	.	.	.	.	.	.	.										.																			.
Template Conservation																								.																																																									.
Template Sequence		V	F	G	N	L	P	E	L	F	H	I	Q	I	G	F	E	G	L	P	I	D	H	.	P	D	I	Y	A	L	A	T	L	Q	T	L	L	G	G	G	G	S	F	S	A	G	G	P	G	K	G	M	Y	S	R	L	Y	T	H	V	L	N	Q	Y	Y	F	V	E	N	C	V	A	F	N	H	S	Y	S	D	S	.
Template Known Secondary structure				S	S	S															T	T	S	.	T	T																S	S			S	S	T	T	S		T	T	S						T	T	T	T		S	S												S	S		.
Template Predicted Secondary structure																								.																																																									.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.				.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		S	G	V	L	A	I	S	A	S	L	T	D	K	G	L	A	N	R	D	Q	V	V	A	A	I	F	S	Y	L	N	L	L	R	E	K	G	.	.	.	I	D	K	Q	Y	F	D	E	L	A	N	V	L	D	I	D	F	R	Y	P	S	I	T	R	D	M	D	Y	V	E	W	L	A	D	T	M	I	R	V	P	V
Query Conservation																																						.	.	.
Alig confidence		.													.	.	.																					.	.	.
Template Conservation		.													.	.	.
Template Sequence		.	G	I	F	G	I	S	L	S	C	I	P	Q	.	.	.	A	A	P	Q	A	V	E	V	I	A	Q	Q	M	Y	N	T	F	A	N	K	D	L	R	L	T	E	D	E	V	S	R	A	K	N	Q	L	K	S	S	L	L	M	N	L	E	S	K	L	V	E	L	E	D	M	G	R	Q	V	L	M	H	G	R	K
Template Known Secondary structure		.											G	G	.	.	.	G														T	T	T	T		T	T	S																						T	T	S																S
Template Predicted Secondary structure		.													.	.	.
Template SS confidence
			327	.	.	330	.	.	.	.	.	.	.	.				.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	T	L	D	A	V	N	I	A	D	R	Y	D	A	K	A	V	K	E	R	L	A	M	M	T	P	Q	N	A	R	I	W	Y	I	S	P	K	E	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	V	N	E	M	I	S	K	I	E	D	L	K	P	D	D	I	S	R	V	A	E	M	I	F	T	G	N	V	N	N	A	G	N	G	K	G	R	A
Template Known Secondary structure													T															T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.