Job Description P0AES2 Confidence 100.00% Date Thu Jan 5 11:24:05 GMT 2012 Rank 54 Aligned Residues 343 % Identity 21% Template c3t8qA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 family protein from hoeflea phototrophica Resolution 2.00 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		V	V	T	E	M	Q	V	I	P	V	A	G	H	D	S	M	L	M	N	L	S	G	A	H	A	P	F	F	T	R	N	I	V	I	I	K	D	N	S	G	H	T	G	V	G	E	I	P	G	G	E	K	.	.	.	I	R	K	T	L	E	D	A	I	P	L	V	V	G	K	T	L	G	E	Y	K	N	V	L	T
Query Conservation																																																						.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.																							.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Template Sequence		K	I	A	D	I	E	T	F	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	F	V	.	C	F	V	K	V	T	T	D	S	G	E	T	G	W	G	Q	V	A	P	Y	Y	A	D	I	T	A	Q	V	L	H	R	Q	V	A	P	Y	A	L	G	K	P	A	L	D	I	D	Y	L	V	D
Template Known Secondary structure		B										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		.								T	T	S									S	S	S												T					T	T	S	B	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.																	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	R	N	T	F	A	D	R	D	A	G	G	R	G	L	Q	T	F	D	L	R	T	T	I	H	V	V	T	G	I	E	A	A	M	L	D	L	L	G	Q	H	L	G	V	N	V	A	S	L	L	G	D	G	Q	Q	R	S	E	V	E	M	L	G	Y	L	F	F	V	G	N	R	K	A	T	P	L	P	Y	Q
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.																																	.			.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.																																	.			.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	P	E	K	E	H	K	F	P	.	.	.	.	.	.	.	.	.	.	G	S	Y	L	R	R	A	L	G	G	L	D	T	A	L	W	D	L	R	G	R	L	E	G	K	P	V	C	E	L	I	G	.	G	T	.	P	G	T	V	R	A	Y	G	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T	T			.	.	.	.	.	.	.	.	.	.	S																							T		B					T	T	.			.	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.																																	.			.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.											.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.		.	110	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.								.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.																.
Query SS confidence																																																	.	.	.	.	.	.	.																.
Query Sequence		S	Q	P	D	D	S	C	D	W	Y	R	L	R	H	E	E	A	M	T	P	D	A	V	V	R	L	A	E	A	A	Y	E	K	Y	G	F	N	D	F	K	L	K	G	G	V	L	A	.	.	.	.	.	.	.	G	E	E	E	A	E	S	I	V	A	L	A	Q	R	F	.	P	Q	A	R	I	T	L	D	P	N
Query Conservation																																																	.	.	.	.	.	.	.																.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																						.														.	.	.	.	.	.	.																.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	M	K	R	D	I	T	P	K	D	E	A	A	R	L	S	R	L	R	D	R	F	.	G	F	D	A	F	K	F	R	I	G	A	E	C	G	R	G	Q	D	E	W	P	G	R	T	E	E	I	V	P	T	I	R	A	A	M	D	D	S	V	A	L	L	V	D	A	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.			S	S	S																	.										S		T	T		T	T			S	S	T	T													S		T	T	S							T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
														119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.
Predicted Secondary structure																			.																																																													.
Query SS confidence																			.																																																													.
Query Sequence		G	A	W	S	L	N	E	A	I	K	I	G	K	Y	L	K	G	.	S	L	A	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	T	A	T	N	M	I	A	T	D	W	R	Q	M	G	H	T	L	S	L	Q	S	V	D	I	P	L	A	D	P	.	H
Query Conservation																			.																																																													.
Alig confidence																			.														.	.	.	.																																												.
Template Conservation																																	.	.	.	.
Template Sequence		S	C	Y	G	P	E	Q	A	I	E	V	G	K	M	L	E	Q	N	G	I	S	H	Y	E	E	P	C	P	Y	W	E	.	.	.	.	Y	E	Q	T	Q	Q	V	T	N	A	L	S	I	D	V	T	G	G	E	Q	D	C	E	L	Q	N	W	R	R	M	I	E	M	K	A	V	D	I	V	Q	P	D	I	C	Y
Template Known Secondary structure		T																	T	T								S		T	T		.	.	.	.												S	S						T	T													T	T			S
Template Predicted Secondary structure																																	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.					.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																																											.	.	.	.
Query SS confidence																																																											.	.	.	.
Query Sequence		F	W	T	M	Q	G	S	V	R	V	A	Q	M	C	H	E	F	G	L	T	W	G	S	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	A	A	A	A	P	G	K	I	T	A	I	D	T	H	W	I	W	Q	.	.	.	.	E	G	N	Q	R	L	T	K	E	P	F	E	I	K	G	G	L	V	Q
Query Conservation																																																											.	.	.	.
Alig confidence																												.																															.	.	.	.
Template Conservation																												.
Template Sequence		L	G	G	I	T	R	T	L	R	V	A	E	M	A	H	K	A	G	L	P	C	T	P	H	A	A	.	N	L	S	M	V	T	L	F	T	M	H	L	L	R	A	I	P	N	A	G	K	Y	L	E	F	S	I	E	G	E	D	Y	Y	P	W	Q	D	D	L	F	V	A	S	P	Y	E	I	V	D	G	K	A	T
Template Known Secondary structure			T	S														T	T			B						.	S	T	T											T	T		T	T	B		S									T	T	T		G	G	G	T	T		B	S	S		S				B	T	T
Template Predicted Secondary structure																												.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	E	K	P	G	L	G	V	E	I	D	M	D	Q	V	M	K	A	H	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	D	L	P	G	W	G	V	E	V	S	P	T	W	L	E	T	S	A	H
Template Known Secondary structure				S		S	B	T				B							T	S
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions