 |
Job Description | P0AES2 | Confidence | 30.90% | Date | Thu Jan 5 11:24:05 GMT 2012 |
Rank | 323 | Aligned Residues | 103 |
% Identity | 16% | Template | c3si9B_ |
PDB info |
PDB header:lyase | Chain: B: PDB Molecule:dihydrodipicolinate synthase; |
PDBTitle: crystal structure of dihydrodipicolinate synthase from bartonella2 henselae
|
Resolution | 2.10 Å |
|
 |
  |   |
184 | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | |
. | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | |
. | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
| . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
Query Sequence |   |
T | P | D | A | V | V | R | L | A | E | A | A | Y | E | K | Y | G | F | N | D | F | K | L | K | G | G | V | . |
. |
. |
. |
. |
L | A | G | E | E | E | A | E | S | I | V | A | L | A | Q | R | F | . |
P | Q | A | R | I | T | L | D | P | N | G | A | W | S | L | N | E | A | I | K | I | G | K | Y | L | K | G | . |
S | L |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |
|
|
|   |
|   | . | . | . | . | . |   |   |   |   |   |
|   |   |   |
|   |
|
|
|
|   |   | . |
|
|   |   |
|   |
|
|
|
|   |   |
|   |   |   |   |
|
|   |   |   |   |   |
|
|   | . |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   | . |
|
|   |
|
|   |
|   |
|   |
|
|
|   |   |   |
|
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   | . |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |   |
|
|
Template Sequence |   |
D | E | K | A | F | C | N | F | V | E | W | Q | I | T | Q | . |
G | I | N | G | V | S | P | V | G | T | T | G | E | S | P | T | L | T | H | E | E | H | K | R | I | I | E | L | C | V | E | Q | V | A | K | R | V | P | V | V | A | G | A | G | . |
S | N | S | T | S | E | A | V | E | L | A | K | H | A | E | K | A | G | A |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | . | T |
| S |  |  |  |
| S | S | T | T | T | T | G | G | G |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S |
| B |  |  |  |
|
| . |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
24 | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | |
. | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | |
. | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . |
  |
  |   |
257 | . | . | 260 | . | . | . | . | . | . | |
|
|
. | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |
|
|
|
|
|
| . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | Y | A | E | D | P | C | G | A | E | . |
. |
. |
Q | G | F | S | G | R | E | V | M | A | E | F | R | R | A | T | G | L | P | T | A | T |
Query Conservation |   |
  |
|
|
|
|
|   |   |   |   | . | . | . |
|   |   |   |   |   |   |   |   |
|   |
|
|   |   |   |   |
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |
|
|
|
|
Template Sequence |   |
D | A | V | L | V | V | T | P | Y | Y | N | R | P | N | Q | R | G | L | Y | T | H | F | S | S | I | A | K | A | I | S | I | P | I | I | I |
Template Known Secondary structure |   |
S |  |  |  |  |  |
|
|
| S | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S |
|  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
102 | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|