Job Description P0AES2 Confidence 100.00% Date Thu Jan 5 11:24:05 GMT 2012 Rank 84 Aligned Residues 353 % Identity 21% Template c3qldB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: structure of probable mandelate racemase (aalaa1draft_2112) from2 alicyclobacillus acidocaldarius Resolution 1.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60								.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.
Query Sequence		V	T	E	M	Q	V	I	P	V	A	G	H	D	S	M	L	M	N	L	S	G	A	H	A	P	F	F	T	R	N	I	V	I	I	K	D	N	S	G	H	T	G	V	G	E	I	P	G	G	E	K	.	.	.	.	.	.	.	I	R	K	T	L	E	D	A	I	P	L	V	V	G	K	T	L	G	E	Y	K	N
Query Conservation																																																					.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Q	T	C	V	L	H	R	L	S	L	P	L	K	F	P	X	R	T	A	H	G	H	I	R	E	K	Q	A	I	L	V	Q	L	V	D	A	D	G	I	E	G	W	S	E	C	V	A	L	A	E	P	T	Y	T	E	E	C	T	D	T	A	W	V	X	L	V	H	H	L	V	P	R	F	A	R	W	L	R	A
Template Known Secondary structure																					T	T																T	T	S										B	S	S	T	T	S	S	S		B											T										T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	T	L	V	R	N	T	F	A	D	R	D	A	G	G	R	G	L	Q	T	F	D	L	R	T	T	I	H	V	V	T	G	I	E	A	A	M	L	D	L	L	G	Q	H	L	G	V	N	V	A	S	L	L	G	D	G	Q	Q	R	S	E	V	E	M	L	G	Y	L	F	F	V	G	N	R	K	A	T	P	L
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.																																	.			.											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.																																	.			.											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	V	D	P	R	T	V	C	E	A	L	R	D	.	.	.	.	.	.	.	.	.	V	R	G	N	R	X	S	V	A	A	I	E	X	A	V	W	D	W	Y	A	A	R	T	G	Q	P	L	V	G	L	L	G	.	G	G	.	R	D	R	V	E	V	S	A	T	L	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						G	G	G	G	G	G	G	G	T	T	.	.	.	.	.	.	.	.	.			S																					T								T	.			.		S				B					.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.																																	.			.											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.										.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.		130	.	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	Q	S	Q	P	D	D	S	C	D	W	Y	R	L	R	H	E	E	A	M	T	P	D	A	V	V	R	L	A	E	A	A	Y	E	K	Y	G	F	N	D	F	K	L	K	G	G	V	L	A	G	E	E	E	A	E	S	I	V	A	L	A	Q	R	F	P	Q	A	R	I	T	L	D	P	N	G	A	W	S	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.												.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.												.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	X	S	E	S	L	D	V	L	I	Q	S	V	D	A	A	V	E	Q	.	G	F	R	R	V	K	L	K	I	A	P	.	.	.	G	R	D	R	A	A	I	K	A	V	R	L	R	Y	P	D	L	A	I	A	A	D	A	N	G	S	Y	R	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S															T	.	T		S							B	T	.	.	.	T	B	S												T	T	S							T	T				G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.												.	.	.
Template SS confidence
																			144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.				.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		243	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320
Predicted Secondary structure														.																																																													.
Query SS confidence														.																																																													.
Query Sequence		N	E	A	I	K	I	G	K	Y	L	K	G	.	S	L	A	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	T	A	T	N	M	I	A	T	D	W	R	Q	M	G	H	T	L	S	L	Q	S	V	D	I	P	L	A	D	P	.	H	F	W	T	M	Q
Query Conservation														.																																																													.
Alig confidence								.						.														.	.	.	.																																												.
Template Conservation								.																				.	.	.	.
Template Sequence		E	D	A	P	V	L	.	R	Q	L	D	A	Y	D	L	Q	F	I	E	Q	P	L	P	E	D	D	.	.	.	.	W	F	D	L	A	K	L	Q	A	S	L	R	T	P	V	C	L	D	E	S	V	R	S	V	R	E	L	K	L	T	A	R	L	G	A	A	R	V	L	N	V	K	P	G	R	L	G	G	F	G
Template Known Secondary structure		G	G					.			G	G	G	G			S						S		T	T		.	.	.	.										T		S	S					S	T	T			S											T			S										T	S
Template Predicted Secondary structure								.																				.	.	.	.
Template SS confidence
		203	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.					.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.		.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		G	S	V	R	V	A	Q	M	C	H	E	F	G	L	T	W	G	S	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	A	A	A	A	P	G	K	I	T	A	I	D	T	H	W	I	W	Q	E	G	N	Q	R	L	T	K	E	P	F	E	.	I	K	G	G	L	V	Q	V	P	E	K	P	G	L	G
Query Conservation																																																																		.
Alig confidence																																				.																														.
Template Conservation																																				.
Template Sequence		A	T	L	R	A	L	D	V	A	G	E	A	G	X	A	A	W	V	G	G	X	Y	E	T	G	V	G	R	V	H	G	L	I	A	.	A	A	L	P	L	X	R	Y	A	T	D	L	G	P	S	D	R	Y	F	E	Q	D	V	L	K	E	P	I	A	F	V	E	P	G	V	I	Q	V	P	Q	C	A	G	V	A
Template Known Secondary structure													T	T																						.	T	T	S	T	T			S		B	S				G	G	G	T		S	S		S	B	S	S					S	B	T	T								S	S	S	G
Template Predicted Secondary structure																																				.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	I	D	M	D	Q	V	M	K	A	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	W	V	D	R	D	A	V	R	R	F	S
Template Known Secondary structure		G	G	B
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions