Job Description P0AES2 Confidence 100.00% Date Thu Jan 5 11:24:05 GMT 2012 Rank 39 Aligned Residues 351 % Identity 19% Template c3n4eA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, c-terminal PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from paracoccus denitrificans pd1222 Resolution 2.40 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.
Query SS confidence																																																														.	.	.	.
Query Sequence		V	V	T	E	M	Q	V	I	P	V	A	G	H	D	S	M	L	M	N	L	S	G	A	H	A	P	F	F	T	R	N	I	V	I	I	K	D	N	S	G	H	T	G	V	G	E	I	P	G	G	E	K	I	R	K	T	L	E	D	A	.	.	.	.	I	P	L	V	V	G	K	T	L	G	E	Y	K	N	V	L
Query Conservation																																																														.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	A	K	V	E	A	L	S	V	A	X	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	S	A	F	V	R	I	T	A	E	D	G	T	V	G	W	G	E	A	S	P	X	L	G	G	I	A	S	L	G	V	V	A	R	D	I	A	P	F	L	E	G	Q	E	V	L	D	H	A	V	L	L
Template Known Secondary structure		B													.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T	S										G	G	G	G										T	T					T	T	S	B	G	G	G
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.															.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	V	R	N	T	F	A	D	R	D	A	G	G	R	G	L	Q	T	F	D	L	R	T	T	I	H	V	V	T	G	I	E	A	A	M	L	D	L	L	G	Q	H	L	G	V	N	V	A	S	L	L	G	D	G	Q	Q	R	S	E	V	E	M	L	G	Y	L	F	F	V	G	N	R	K	A	T	P	L	P	Y
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.																																	.																					.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.																																	.																					.	.	.	.	.	.
Template Sequence		D	R	X	X	H	R	L	V	K	L	G	P	.	.	.	.	.	.	.	.	.	E	G	I	A	T	A	A	L	A	A	C	D	I	A	L	W	D	L	K	G	K	L	L	G	Q	P	I	Y	K	L	L	G	.	G	A	W	R	T	R	L	P	C	Y	S	S	I	G	G	N	A	A	R	S	.	.	.	.	.	.
Template Known Secondary structure								S	G	G	G			.	.	.	.	.	.	.	.	.	T	T																						T	S	B					T	T	.			S		S												S	S	S		.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.																																	.																					.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.										.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210							.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.																		.
Query SS confidence																																																.	.	.	.	.	.																		.
Query Sequence		Q	S	Q	P	D	D	S	C	D	W	Y	R	L	R	H	E	E	A	M	T	P	D	A	V	V	R	L	A	E	A	A	Y	E	K	Y	G	F	N	D	F	K	L	K	G	G	V	.	.	.	.	.	.	L	A	G	E	E	E	A	E	S	I	V	A	L	A	Q	R	F	.	P	Q	A	R	I	T	L	D	P	N
Query Conservation																																																.	.	.	.	.	.																		.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.	.	.	.	.	.																		.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	E	V	V	R	E	V	A	R	R	V	E	A	E	.	Q	P	A	A	V	K	I	R	W	D	G	D	R	T	R	C	D	V	D	I	P	G	D	I	A	K	A	R	A	V	R	E	L	L	G	P	D	A	V	I	G	F	D	A	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.			S										T	T			S																			S	S								T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
																					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.
Predicted Secondary structure																			.																																																													.
Query SS confidence																			.																																																													.
Query Sequence		G	A	W	S	L	N	E	A	I	K	I	G	K	Y	L	K	G	.	S	L	A	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	T	A	T	N	M	I	A	T	D	W	R	Q	M	G	H	T	L	S	L	Q	S	V	D	I	P	L	A	D	P	.	H
Query Conservation																			.																																																													.
Alig confidence																			.														.	.	.	.																																	.											.
Template Conservation																																	.	.	.	.																																	.
Template Sequence		N	G	Y	S	V	G	G	A	I	R	V	G	R	A	L	E	D	L	G	Y	S	W	F	E	E	P	V	Q	H	Y	H	.	.	.	.	V	G	A	X	G	E	V	A	Q	R	L	D	I	T	V	S	A	G	E	Q	T	Y	T	L	Q	A	L	K	D	L	I	L	.	S	G	V	R	X	V	Q	P	D	I	V	K
Template Known Secondary structure		T																	T	T		S						S		T	T		.	.	.	.												S	S				B		T	T			S										.		T								T	T	T
Template Predicted Secondary structure																																	.	.	.	.																																	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230					.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	W	T	M	Q	G	S	V	R	V	A	Q	M	C	H	E	F	G	L	T	W	G	S	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	A	A	A	A	P	G	K	I	T	A	I	D	T	H	W	I	W	Q	E	G	N	Q	R	L	T	K	E	P	F	E	I	K	G	G	L	V	Q	V	P	E	K
Query Conservation
Alig confidence																										.																													.
Template Conservation																										.																													.
Template Sequence		X	G	G	I	T	G	X	X	Q	C	A	A	L	A	H	A	H	G	V	E	F	V	P	H	.	Q	T	Q	P	G	V	G	H	F	A	N	I	H	V	L	S	T	L	X	H	X	T	K	P	V	E	L	A	.	D	R	W	D	R	G	R	P	V	F	R	N	P	A	E	P	V	D	G	H	F	A	L	G	D	A
Template Known Secondary structure		T	T																T							.				S	S												T		T	T			S						.	T	T	G	G	G	G	T	T	T	B	S	S					B	T	T
Template Predicted Secondary structure																										.																													.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	L	G	V	E	I	D	M	D	Q	V	M	K	A	H	E	L	Y	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	G	L	G	I	V	V	D	E	D	E	L	A	S	R	A	T	E	I	T	V
Template Known Secondary structure		S	B	T				B														T
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions