Job Description P0AES2 Confidence 100.00% Date Thu Jan 5 11:24:05 GMT 2012 Rank 70 Aligned Residues 337 % Identity 16% Template c3ik4A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from herpetosiphon aurantiacus Resolution 2.10 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60									.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.
Query Sequence		T	T	P	V	V	T	E	M	Q	V	I	P	V	A	G	H	D	S	M	L	M	N	L	S	G	A	H	A	P	F	F	T	R	N	I	V	I	I	K	D	N	S	G	H	T	G	V	G	E	I	P	G	G	E	K	.	.	.	.	.	.	.	.	I	R	K	T	L	E	D	A	I	P	L	V	V	G	K	T	L
Query Conservation																																																									.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.
Template Sequence		L	P	T	T	I	Q	A	I	S	A	E	A	I	N	L	P	L	T	E	P	A	V	A	A	N	.	.	.	.	.	.	.	.	V	L	V	K	V	Q	L	A	D	G	T	L	G	L	G	E	A	A	P	F	P	A	V	S	G	E	T	Q	T	G	T	S	A	A	I	E	R	L	Q	S	H	L	L	G	A	D	V
Template Known Secondary structure			T	T	B													B	S								.	.	.	.	.	.	.	.								T	T	S												T	T	T															G	G	G	T	T	T		B	G
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.									.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	Y	K	N	V	L	T	L	V	R	N	T	F	A	D	R	D	A	G	G	R	G	L	Q	T	F	D	L	R	T	T	I	H	V	V	T	G	I	E	A	A	M	L	D	L	L	G	Q	H	L	G	V	N	V	A	S	L	L	G	D	G	Q	Q	R	S	E	V	E	M	L	G	Y	L	F	F	V	G	N	R
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.			.												.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.			.												.	.	.	.	.
Template Sequence		R	G	W	R	K	L	A	A	M	L	D	H	A	E	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	A	A	A	R	C	G	L	E	M	A	M	L	D	A	L	T	R	H	Y	H	M	P	L	H	V	F	F	G	.	G	V	.	S	K	Q	L	E	T	D	M	T	I	T	.	.	.	.	.
Template Known Secondary structure		G	G													T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T																				T	T		B					T	T	.		S	.		S				B						.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.			.												.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.																.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.		.	.	130	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	T	P	L	P	Y	Q	S	Q	P	D	D	S	C	D	W	Y	R	L	R	H	E	E	A	M	T	P	D	A	V	V	R	L	A	E	A	A	Y	E	K	Y	G	F	N	D	F	K	L	K	G	G	V	L	A	G	E	E	E	A	E	S	I	V	A	L	A	Q	R	F	P	Q	A	R	I	T	L	D	P	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	D	E	V	H	A	A	A	S	A	K	A	I	L	A	R	.	G	I	K	S	I	K	V	K	T	A	G	V	D	V	A	Y	D	L	A	R	L	R	A	I	H	Q	A	A	P	T	A	P	L	I	V	D	G	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S															T	.	T										S	S																S	S	S								T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
																										139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																		.	.		.
Query SS confidence																		.	.		.
Query Sequence		G	A	W	S	L	N	E	A	I	K	I	G	K	Y	L	K	.	.	G	.	S	L	A	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	T	A	T	N	M	I	A	T	D	W	R	Q	M	G	H	T	L	S	L	Q	S	V	D	I	P	L	A	D	P
Query Conservation																		.	.		.
Alig confidence																		.	.		.														.	.	.	.
Template Conservation																																			.	.	.	.
Template Sequence		C	G	Y	D	V	E	R	A	L	A	F	C	A	A	C	K	A	E	S	I	P	M	V	L	F	E	Q	P	L	P	R	E	D	.	.	.	.	W	A	G	M	A	Q	V	T	A	Q	S	G	F	A	V	A	A	D	E	S	A	R	S	A	H	D	V	L	R	I	A	R	E	G	T	A	S	V	I	N	I	K	L
Template Known Secondary structure		T																	T	T										S		T	T		.	.	.	.											S	S	S					S	T	T		S	S											T			S
Template Predicted Secondary structure																																			.	.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.					.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	F	W	T	M	Q	G	S	V	R	V	A	Q	M	C	H	E	F	G	L	T	W	G	S	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	A	A	A	A	P	G	K	I	T	A	I	D	T	H	W	I	W	Q	E	G	N	Q	R	L	T	K	E	P	F	E	I	K	G	G	L	V	Q	V	P	E
Query Conservation
Alig confidence																																																			.							.
Template Conservation																																																			.							.
Template Sequence		M	K	A	G	V	A	E	G	L	K	M	I	A	I	A	Q	A	A	G	L	G	L	M	I	G	G	M	V	E	S	I	L	A	M	S	F	S	A	N	L	A	A	G	N	G	G	F	D	F	.	I	D	L	D	T	P	.	L	F	I	A	E	H	P	F	I	G	G	F	A	Q	T	G	G	T	L	Q	L	A	D
Template Known Secondary structure																				T								S	S																						.					G	G	.	G	G	B	S			S				S					T	T						S
Template Predicted Secondary structure																																																			.							.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.		.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		395	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	G	L	G	V	E	I	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	G	H	G	V	N	L	E
Template Known Secondary structure			S	B	T
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions