Job Description P0AES2 Confidence 100.00% Date Thu Jan 5 11:24:05 GMT 2012 Rank 41 Aligned Residues 342 % Identity 20% Template c3bsmD_ PDB info PDB header:lyase Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of d-mannonate dehydratase from2 chromohalobacter salexigens Resolution 2.20 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.					.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.
Query SS confidence																																																											.	.	.	.
Query Sequence		V	V	T	E	M	Q	V	I	P	V	A	G	H	D	S	M	L	M	N	L	S	G	A	H	A	P	F	F	T	R	N	I	V	I	I	K	D	N	S	G	H	T	G	V	G	E	I	P	G	G	E	K	I	R	K	T	L	.	.	.	.	E	D	A	I	P	L	V	V	G	K	T	L	G	E	Y	K	N	V	L
Query Conservation																																																											.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	R	D	A	Y	T	I	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	P	G	R	N	F	V	T	L	K	I	V	T	E	S	G	T	H	G	I	G	D	A	T	L	N	G	R	E	M	A	V	A	A	Y	L	D	E	H	V	V	P	A	L	I	G	R	D	A	G	R	I	E	D	T	W
Template Known Secondary structure		B										.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S										T	T	S										T	T												T						T	T	S	B	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.															.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	V	R	N	T	F	A	D	R	D	A	G	G	R	G	L	Q	T	F	D	L	R	T	T	I	H	V	V	T	G	I	E	A	A	M	L	D	L	L	G	Q	H	L	G	V	N	V	A	S	L	L	G	D	G	Q	Q	R	S	E	V	E	M	L	G	Y	L	F	F	V	G	N	R	K	A	T	P	L	P	Y
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.																																	.															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.																																	.															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	Y	L	Y	R	G	A	Y	W	R	R	.	.	.	.	.	.	.	.	.	.	G	P	V	T	M	T	A	I	A	A	V	D	M	A	L	W	D	I	K	A	K	A	A	G	M	P	L	Y	Q	L	L	G	.	G	K	S	R	E	R	V	M	T	Y	A	H	C	T	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	S			.	.	.	.	.	.	.	.	.	.																								T	S	B						T	.			S		S	S									.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.																																	.															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80											.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.						.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.																	.
Query SS confidence																																																	.	.	.	.	.																	.
Query Sequence		Q	S	Q	P	D	D	S	C	D	W	Y	R	L	R	H	E	E	A	M	T	P	D	A	V	V	R	L	A	E	A	A	Y	E	K	Y	G	F	N	D	F	K	L	K	G	G	V	L	.	.	.	.	.	A	G	E	E	E	A	E	S	I	V	A	L	A	Q	R	F	.	P	Q	A	R	I	T	L	D	P	N	G
Query Conservation																																																	.	.	.	.	.																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.													.	.	.	.	.																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	T	I	E	D	C	L	G	E	V	A	R	H	V	E	L	.	G	Y	R	A	V	R	V	Q	S	G	V	P	G	S	T	E	K	Y	L	N	H	A	P	K	L	F	A	A	V	R	E	R	F	G	D	D	L	H	V	L	H	D	V	H	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S														T	.	T		S																																S	S	S							T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
																			127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																		.																																																															.
Query SS confidence																		.																																																															.
Query Sequence		A	W	S	L	N	E	A	I	K	I	G	K	Y	L	K	G	.	S	L	A	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	T	A	T	N	M	I	A	T	D	W	R	Q	M	G	H	T	L	S	L	Q	S	V	D	I	P	L	A	D	P	H	F	.
Query Conservation																		.																																																															.
Alig confidence																		.														.	.	.	.																																														.
Template Conservation																																.	.	.	.
Template Sequence		R	L	T	P	I	E	A	A	R	L	G	K	A	V	E	P	Y	H	L	F	W	L	E	D	C	V	P	A	E	N	.	.	.	.	Q	E	S	L	R	L	I	R	E	H	T	T	T	P	L	A	I	G	E	V	F	N	S	I	H	D	C	R	E	L	I	Q	N	Q	W	I	D	Y	I	R	M	P	L	T	H	G
Template Known Secondary structure			S												T	G	G	G			S						S			S	S	.	.	.	.	G	G	G	G									S						T	T			S	G	G	G	T						T	T			S						T	T	T	T
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.					.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.		.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		W	T	M	Q	G	S	V	R	V	A	Q	M	C	H	E	F	G	L	T	W	G	S	H	S	N	N	H	.	F	D	I	S	L	A	M	F	T	H	V	A	A	A	A	P	G	K	I	T	A	I	D	T	H	W	I	W	Q	E	G	N	Q	R	L	T	K	E	P	F	E	I	K	G	G	L	V	Q	V	P	E	K
Query Conservation																													.
Alig confidence																													.																										.	.
Template Conservation																																																							.	.
Template Sequence		G	G	I	T	A	M	R	R	V	A	D	L	A	S	L	Y	H	V	R	T	G	F	H	G	P	T	D	L	S	P	V	C	L	G	A	A	I	H	F	D	T	W	V	P	N	F	G	I	Q	E	H	M	P	.	.	H	T	D	E	T	D	A	V	F	P	H	D	Y	R	F	E	D	G	H	F	L	A	G	E	S
Template Known Secondary structure		T															T	T									T	T	S																T	T	B								.	.									S		B						T	T							S
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.			.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	L	G	V	E	I	D	M	D	Q	V	M	K	A	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	G	H	G	V	D	I	D	E	E	L	A	A	K	Y	P
Template Known Secondary structure		S	B	T	S	B									T	S
Template Predicted Secondary structure
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions