Job Description P0AES2 Confidence 94.13% Date Thu Jan 5 11:24:05 GMT 2012 Rank 180 Aligned Residues 124 % Identity 15% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.																.	.	.	.	.	.	.	220	.	.	.	.	.	.	.			.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.		.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.		.
Query Sequence		A	M	T	P	D	A	V	V	R	L	A	E	A	A	Y	E	K	Y	G	F	N	D	F	K	L	K	G	G	V	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	E	E	A	E	S	I	V	A	L	A	Q	R	F	.	.	P	.	Q	A	R	I	T	L	D	P	N	G	A	W	S	L	N
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.		.
Alig confidence																			.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.		.
Template Conservation																			.
Template Sequence		G	S	D	P	K	S	L	A	E	A	A	R	I	G	E	A	F	.	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	R	L	G	L	E	G	K	E	T	Y	R
Template Known Secondary structure			S															T	.	T		S										S							T		G	G	G	G	G	G														T	T		S	S								S		B	T	T
Template Predicted Secondary structure																			.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.																.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure													.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence													.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		E	A	I	K	I	G	K	Y	L	K	G	.	S	L	A	Y	A	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	.	G	L	P	T	A	T	N	M	I	A	T	D	W	R	Q	M	G	H	T	L	S	L	Q	S
Query Conservation													.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence													.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.												.																						.	.
Template Conservation																																										.	.	.	.																																		.	.
Template Sequence		G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	.	.	.	.	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	K	.	.	R
Template Known Secondary structure													T	T									S		B		T	T	S		T	T	G	G	G	T	S	S				.	.	.	.												T	T	S						S	S			S									T	.	.	T
Template Predicted Secondary structure																																										.	.	.	.																																		.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.
		307	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	I	P	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	G	V	X	L
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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