|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | K | L | V | T | V | I | I | K | P | F | K | L | E | D | V | R | E | A | L | S | S | I | G | I | Q | G | L | T | V | T | E | V | K | G | F | G | R | Q | K | G | H | A | E | L | Y | R | G | A | E | Y | S | V | N | F | L | P | K | V | K | I | D | V | A | I | A | D | D | Q | L | D | E | V | I | D | I | V | S | K | A |
Query Conservation |   |
|
|   |
|   |
|
|
|
|   |   |   |   |   |   |
|   |   |
|
|   |   |   |
|   |   |
|   |
|
|   |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|
|
|   |
|
|   |
|
|   |
|
|   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|   |
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|
|   |
|   |
|
|   |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . |   |   |
|   |
|
|
|
|
|   |
|
|   |   |
|   |
|   |   |   |
|   |
|   |
Template Sequence |   |
L | K | L | V | T | I | V | A | E | S | L | L | E | K | R | L | V | E | E | V | K | R | L | G | A | K | G | Y | T | I | T | P | A | R | G | E | G | S | R | G | I | R | S | V | D | W | E | G | . |
. |
. |
. |
. |
. |
. |
. |
Q | N | I | R | L | E | T | I | V | S | E | E | V | A | L | R | I | L | Q | R | L | Q | E | E |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | G | G | G |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|
|  |  |  |  |  |
|
| T | T |
|
|
| T | T |
| S |
| S | T | T | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | Y | T | G | K | I | G | D | G | K | I | F | V | A | E | L | Q | R | V | I | R | I | R | T | G | E | A |
Query Conservation |   |
  |   |
|
|   |   |
|
|
|   |
|
|
|   |
|
|   |   |   |
|   |
|
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   | . | . |
|
|
|
|
|   |
|
| . | . | . | . |   |
|   |
|
|
|   |
Template Sequence |   |
Y | F | P | H | Y | A | . |
. |
V | I | A | Y | V | E | N | V | . |
. |
. |
. |
W | V | V | R | G | E | K |
Template Known Secondary structure |   |
T | T | T | T | S |
| . | . |
|  |  |  |  |  |  |  | . | . | . | . |  |  |  | T | G | G | G |
Template Predicted Secondary structure |   |
 |  |
|
|
|
| . | . |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
78 | . | 80 | . | . | . | |
|
. | . | . | . | . | . | 90 | . | |
|
|
|
. | . | . | . | . | . | . |
  |