Email l.a.kelley@imperial.ac.uk Description P56580 Date Thu Jan 5 12:06:25 GMT 2012 Unique Job ID cef61438c6af926d

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2hrva_ 47.0 75 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral cysteine protease of trypsin fold 2 c1z8rA_ 43.3 75 PDB header:hydrolase Chain: A: PDB Molecule:coxsackievirus b4 polyprotein; PDBTitle: 2a cysteine proteinase from human coxsackievirus b4 (strain2 jvb / benschoten / new york / 51) 3 d1bupa2 34.2 31 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 4 d1jcea2 23.3 28 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 5 c2he4A_ 23.3 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:na(+)/h(+) exchange regulatory cofactor nhe-rf2; PDBTitle: the crystal structure of the second pdz domain of human2 nherf-2 (slc9a3r2) interacting with a mode 1 pdz binding3 motif 6 c3dgsA_ 21.5 32 PDB header:viral protein Chain: A: PDB Molecule:coat protein a; PDBTitle: changing the determinants of protein stability from2 covalent to non-covalent interactions by in-vitro3 evolution: a structural and energetic analysis 7 c3nvbA_ 21.0 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of n-terminal part of the protein bf1531 from2 bacteroides fragilis containing phosphatase domain complexed with mg3 and tungstate 8 d2hf3a1 16.8 33 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 9 d1bxla_ 16.1 22 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 10 c2v90E_ 15.6 15 PDB header:protein-binding Chain: E: PDB Molecule:pdz domain-containing protein 3; PDBTitle: crystal structure of the 3rd pdz domain of intestine- and2 kidney-enriched pdz domain ikepp (pdzd3) 11 d1ysga1 14.6 22 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 12 d1be9a_ 14.3 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 13 d2c4ka1 14.3 11 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 14 c2jr3A_ 13.6 55 PDB header:antimicrobial protein Chain: A: PDB Molecule:pelovaterin; PDBTitle: antibacterial peptide from eggshell matrix: structure and2 self-assembly of beta-defensin like peptide from the3 chinese soft-shelled turtle eggshell 15 d1t95a3 13.6 21 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:Hypothetical protein AF0491, C-terminal domain 16 d2naca2 13.3 19 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 17 d1p9qc3 12.9 21 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:Hypothetical protein AF0491, C-terminal domain 18 d2e8aa2 12.9 36 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 19 c2vyaB_ 12.8 35 PDB header:hydrolase Chain: B: PDB Molecule:fatty-acid amide hydrolase 1; PDBTitle: crystal structure of fatty acid amide hydrolase conjugated2 with the drug-like inhibitor pf-750 20 c1g0dA_ 12.2 39 PDB header:transferase Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase; PDBTitle: crystal structure of red sea bream transglutaminase 21 d1q59a_ not modelled 11.4 20 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 22 d1dkua1 not modelled 11.3 12 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 23 d1x6ma_ not modelled 11.1 44 Fold:Mss4-like Superfamily:Mss4-like Family:Glutathione-dependent formaldehyde-activating enzyme, Gfa 24 c2d90A_ not modelled 10.9 22 PDB header:protein binding Chain: A: PDB Molecule:pdz domain containing protein 1; PDBTitle: solution structure of the third pdz domain of pdz domain2 containing protein 1 25 c1dkrB_ not modelled 10.8 13 PDB header:transferase Chain: B: PDB Molecule:phosphoribosyl pyrophosphate synthetase; PDBTitle: crystal structures of bacillus subtilis phosphoribosylpyrophosphate2 synthetase: molecular basis of allosteric inhibition and activation. 26 d1pbya2 not modelled 10.5 29 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 27 c1l9mB_ not modelled 10.5 32 PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation 28 c3g9bA_ not modelled 10.5 11 PDB header:transferase Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide-protein PDBTitle: crystal structure of reduced ost6l 29 c3pk1A_ not modelled 10.5 11 PDB header:apoptosis/apoptosis regulator Chain: A: PDB Molecule:induced myeloid leukemia cell differentiation protein mcl- PDBTitle: crystal structure of mcl-1 in complex with the baxbh3 domain 30 d3eeqa2 not modelled 10.1 11 Fold:CbiG N-terminal domain-like Superfamily:CbiG N-terminal domain-like Family:CbiG N-terminal domain-like 31 d1g5ma_ not modelled 9.9 20 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 32 d1zy3a1 not modelled 9.9 22 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 33 d2ponb1 not modelled 9.9 22 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 34 c2k2wA_ not modelled 9.5 46 PDB header:cell cycle Chain: A: PDB Molecule:recombination and dna repair protein; PDBTitle: second brct domain of nbs1 35 c2dazA_ not modelled 9.5 12 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the 7th pdz domain of inad-like2 protein 36 d1wmaa1 not modelled 9.4 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 37 c2yv6A_ not modelled 9.4 22 PDB header:apoptosis Chain: A: PDB Molecule:bcl-2 homologous antagonist/killer; PDBTitle: crystal structure of human bcl-2 family protein bak 38 d1o0la_ not modelled 9.1 24 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 39 d1f16a_ not modelled 9.0 13 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 40 d1q5xa_ not modelled 9.0 40 Fold:The "swivelling" beta/beta/alpha domain Superfamily:RraA-like Family:RraA-like 41 c3qbrA_ not modelled 8.8 13 PDB header:apoptosis Chain: A: PDB Molecule:sjchgc06286 protein; PDBTitle: bakbh3 in complex with sja 42 d1ln4a_ not modelled 8.8 29 Fold:IF3-like Superfamily:YhbY-like Family:YhbY-like 43 d1ul1x1 not modelled 8.6 11 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 44 d1n7ea_ not modelled 8.5 14 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 45 c3q87A_ not modelled 8.3 67 PDB header:transferase activator/transferase Chain: A: PDB Molecule:putative uncharacterized protein ecu08_1170; PDBTitle: structure of eukaryotic translation termination complex2 methyltransferase mtq2-trm112 46 d1l0wa2 not modelled 8.1 15 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 47 d2i7pa2 not modelled 8.1 8 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 48 d1k8ka1 not modelled 8.0 33 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 49 d1q18a1 not modelled 8.0 25 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 50 d1jmxa2 not modelled 8.0 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 51 d1l8wa_ not modelled 7.7 8 Fold:Variable surface antigen VlsE Superfamily:Variable surface antigen VlsE Family:Variable surface antigen VlsE 52 c1l8wA_ not modelled 7.7 8 PDB header:immune system Chain: A: PDB Molecule:vlse1; PDBTitle: crystal structure of lyme disease variable surface antigen2 vlse of borrelia burgdorferi 53 c2nacA_ not modelled 7.6 19 PDB header:oxidoreductase(aldehyde(d),nad+(a)) Chain: A: PDB Molecule:nad-dependent formate dehydrogenase; PDBTitle: high resolution structures of holo and apo formate dehydrogenase 54 d1roda_ not modelled 7.6 24 Fold:IL8-like Superfamily:Interleukin 8-like chemokines Family:Interleukin 8-like chemokines 55 d1mt5a_ not modelled 7.4 41 Fold:Amidase signature (AS) enzymes Superfamily:Amidase signature (AS) enzymes Family:Amidase signature (AS) enzymes 56 c2egkC_ not modelled 7.4 13 PDB header:protein binding Chain: C: PDB Molecule:general receptor for phosphoinositides 1- PDBTitle: crystal structure of tamalin pdz-intrinsic ligand fusion2 protein 57 d1dkgd2 not modelled 7.3 56 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 58 d1c0aa2 not modelled 7.3 19 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 59 c2ph7B_ not modelled 7.2 33 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein af_2093; PDBTitle: crystal structure of af2093 from archaeoglobus fulgidus 60 d1u9ya1 not modelled 7.2 18 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 61 c3hfwA_ not modelled 7.1 27 PDB header:hydrolase Chain: A: PDB Molecule:protein adp-ribosylarginine hydrolase; PDBTitle: crystal structure of human adp-ribosylhydrolase 1 (harh1) 62 d1v4va_ not modelled 7.1 21 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 63 d1vpra1 not modelled 6.8 75 Fold:Lipocalins Superfamily:Lipocalins Family:Dinoflagellate luciferase repeat 64 c2xa0A_ not modelled 6.8 19 PDB header:apoptosis Chain: A: PDB Molecule:apoptosis regulator bcl-2; PDBTitle: crystal structure of bcl-2 in complex with a bax bh32 peptide 65 c2nrhA_ not modelled 6.5 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:transcriptional activator, putative, baf family; PDBTitle: crystal structure of conserved putative baf family2 transcriptional activator from campylobacter jejuni 66 c2jkzB_ not modelled 6.5 17 PDB header:transferase Chain: B: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: saccharomyces cerevisiae hypoxanthine-guanine2 phosphoribosyltransferase in complex with gmp (guanosine 5'3 -monophosphate) (orthorhombic crystal form) 67 c3eeqB_ not modelled 6.3 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative cobalamin biosynthesis protein g PDBTitle: crystal structure of a putative cobalamin biosynthesis2 protein g homolog from sulfolobus solfataricus 68 c3c8oB_ not modelled 6.1 47 PDB header:hydrolase regulator Chain: B: PDB Molecule:regulator of ribonuclease activity a; PDBTitle: the crystal structure of rraa from pao1 69 d1bwva2 not modelled 6.0 22 Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase 70 c2o2fA_ not modelled 6.0 20 PDB header:apoptosis Chain: A: PDB Molecule:apoptosis regulator bcl-2; PDBTitle: solution structure of the anti-apoptotic protein bcl-2 in2 complex with an acyl-sulfonamide-based ligand 71 c3lnoA_ not modelled 6.0 33 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of domain of unknown function duf59 from2 bacillus anthracis 72 c1kv3F_ not modelled 5.9 50 PDB header:transferase Chain: F: PDB Molecule:protein-glutamine gamma-glutamyltransferase; PDBTitle: human tissue transglutaminase in gdp bound form 73 c2yuyA_ not modelled 5.8 14 PDB header:signaling protein Chain: A: PDB Molecule:rho gtpase activating protein 21; PDBTitle: solution structure of pdz domain of rho gtpase activating2 protein 21 74 c3iraA_ not modelled 5.5 46 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: the crystal structure of one domain of the conserved protein from2 methanosarcina mazei go1 75 c2dc0A_ not modelled 5.4 34 PDB header:hydrolase Chain: A: PDB Molecule:probable amidase; PDBTitle: crystal structure of amidase 76 d1rxwa1 not modelled 5.4 14 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 77 d1j9ba_ not modelled 5.4 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like 78 d8ruca2 not modelled 5.3 7 Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase 79 d1ee8a1 not modelled 5.3 33 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 80 d1ujva_ not modelled 5.3 36 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 81 d1svda2 not modelled 5.1 13 Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase 82 c2gx5B_ not modelled 5.1 5 PDB header:transcription Chain: B: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody; PDBTitle: n-terminal gaf domain of transcriptional pleiotropic repressor cody 83 d1vi4a_ not modelled 5.1 27 Fold:The "swivelling" beta/beta/alpha domain Superfamily:RraA-like Family:RraA-like 84 d1pq1a_ not modelled 5.0 20 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 85 d2jm6b1 not modelled 5.0 13 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 86 d1wjpa2 not modelled 5.0 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2