Job Description P00903 Confidence 99.97% Date Thu Jan 5 10:57:07 GMT 2012 Rank 29 Aligned Residues 179 % Identity 19% Template c3fijD_ PDB info PDB header:structural genomics, unknown function Chain: D: PDB Molecule:lin1909 protein; PDBTitle: crystal structure of a uncharacterized protein lin1909 Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.																			.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	L	L	I	D	N	Y	D	S	F	T	W	N	L	Y	Q	Y	F	C	E	L	G	A	D	V	L	V	K	R	N	D	A	L	T	L	A	D	I	D	A	L	K	P	Q	K	I	V	I	S	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	C	T	P	D	E	A	G	I	S	L
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.
Template Sequence		V	I	G	I	T	G	Q	.	.	.	.	Q	R	Y	V	D	A	I	Q	K	V	G	G	F	P	I	A	L	P	I	D	D	P	S	T	A	V	Q	A	I	S	L	V	D	G	L	L	L	T	G	G	Q	D	I	T	P	Q	L	Y	L	E	E	P	S	Q	E	I	G	A	Y	F	P	P	R	D	S	Y	E	I	A
Template Known Secondary structure									.	.	.	.										T	T											G	G	G							T		S								S				G	G	G	G	T					T	T
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.					.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.															.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	V	I	R	H	Y	A	G	R	L	P	I	L	G	V	C	L	G	H	Q	A	M	A	Q	A	F	G	G	K	V	V	R	A	A	K	V	M	H	G	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	I	T	H	N	G	E	G	V	F	R	G	L	A	N	P	L	T	V	T	R	Y	H	S
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	V	R	A	A	L	D	A	G	K	P	I	F	A	I	C	R	G	X	Q	L	V	N	V	A	L	G	G	T	L	Y	Q	D	I	S	Q	V	E	T	K	A	L	Q	H	L	Q	R	V	D	E	Q	L	G	S	H	T	I	D	I	E	P	T	S	E	L	A	K	H	H	P	N	K	K	L	V	N	S	L	H	H
Template Known Secondary structure										T							T										T	T					S	S	G	G	G	S	S	S						B			S		T	T	S									T	T	S	T	G	G	G	T	S		T	T						B		S
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																		.	.												.	.
Query SS confidence																																		.	.												.	.
Query Sequence		L	V	V	E	P	D	S	L	P	A	C	F	D	V	T	A	W	S	E	T	R	E	I	M	G	I	R	H	R	Q	W	D	.	.	L	E	G	V	Q	F	H	P	E	S	I	.	.	L	S	E	Q	G	H	Q	L	L	A	N	F	L	H
Query Conservation																																		.	.												.	.
Alig confidence						.	.																											.	.												.	.
Template Conservation						.	.
Template Sequence		Q	F	I	K	.	.	K	L	A	P	S	F	K	V	T	A	R	T	A	D	G	X	I	E	A	V	E	G	D	N	L	P	S	W	Y	L	G	V	Q	W	H	P	E	L	X	F	Q	T	D	P	E	S	E	Q	L	F	Q	A	L	V	D
Template Known Secondary structure						.	.	S			T	T								T	T									S	S		S	S						S	S		G	G	G	T	T	T	T
Template Predicted Secondary structure						.	.
Template SS confidence
		180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions