 |
Job Description | P31142 | Confidence | 56.48% | Date | Thu Jan 5 11:47:20 GMT 2012 |
Rank | 141 | Aligned Residues | 50 |
% Identity | 20% | Template | c2kbfA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:atp-dependent rna helicase dbp5; |
PDBTitle: solution structure of carboxyl-terminal domain of dbp5p
|
Resolution | UNK |
|
  |   |
216 | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | D | E | L | D | A | I | F | F | G | R | G | V | S | Y | D | K | P | I | I | V | S | C | G | S | G | V | T | A | A | V | V | L | L | A | L | A | T | L | D | V | P | N | V | K | L | Y | D | G | A | W |
Query Conservation |   |
  |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|
|   |
|
|   |
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |
Template Sequence |   |
A | D | K | F | D | V | L | T | E | L | Y | G | L | M | T | I | G | S | S | I | I | F | V | A | T | K | K | T | A | N | V | L | Y | G | K | L | K | S | E | G | H | E | . |
V | S | I | L | H | G | D | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | T | T | S |
|
| S |
|  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |
| . |
|  |  |  | S | S |
| S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . |
|  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
315 | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | |
. | . | . | 360 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|