Job Description P0A9H7 Confidence 98.25% Date Wed Jan 25 15:20:19 GMT 2012 Rank 297 Aligned Residues 141 % Identity 21% Template c3khkA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:type i restriction-modification system PDBTitle: crystal structure of type-i restriction-modification system2 methylation subunit (mm_0429) from methanosarchina mazei. Resolution 2.55 Å

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		121	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.																																																							.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.																																																							.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	G	N	D	L	F	S	R	M	L	D	P	.	.	.	F	M	Q	Y	S	C	A	Y	W	K	D	A	D	N	L	E	S	A	Q	Q	A	K	L	K	M	I	C	E	K	L	Q	L	K	P	G	M	R	V	L	D	I	G	C	G	W	G	G	L	A	H	Y	M	A	S	.	.	.	.	.	.	.	.	.	.
Query Conservation															.	.	.																																																							.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.																.	.	.	.	.	.	.														.																			.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.														.
Template Sequence		D	I	L	G	H	V	Y	E	Y	F	L	G	Q	F	A	L	A	E	G	K	Q	G	G	Q	Y	Y	T	P	K	S	I	.	.	.	.	.	.	.	V	T	L	I	V	E	M	L	E	P	Y	K	G	.	R	V	Y	D	P	A	M	G	S	G	G	F	F	V	S	S	D	K	F	I	E	K	H	A	N	V	K	H
Template Known Secondary structure			S															T	T	T			S	T	T	T							.	.	.	.	.	.	.												S		.					S	S		T	T																			T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.														.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.								.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
								188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.					.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																														.	.	.	.											.	.	.	.													.	.											.	.	.
Query SS confidence		.	.	.	.	.	.																														.	.	.	.											.	.	.	.													.	.											.	.	.
Query Sequence		.	.	.	.	.	.	N	Y	D	V	S	V	V	G	V	T	I	S	A	E	Q	Q	K	M	A	Q	E	R	C	E	G	L	D	V	T	.	.	.	.	I	L	L	Q	D	Y	R	D	L	N	.	.	.	.	D	Q	F	D	R	I	V	S	V	G	M	F	.	.	E	H	V	G	P	K	N	Y	D	T	.	.	.
Query Conservation		.	.	.	.	.	.																														.	.	.	.											.	.	.	.													.	.											.	.	.
Alig confidence		.	.	.	.	.	.																														.	.	.	.											.	.	.	.													.	.											.	.	.
Template Conservation
Template Sequence		Y	N	A	S	E	Q	K	K	Q	I	S	V	Y	G	Q	E	S	N	P	T	T	W	K	L	A	A	M	N	M	V	I	R	G	I	D	F	N	F	G	K	K	N	A	D	S	F	L	D	D	Q	H	P	D	L	R	A	D	F	V	M	T	N	P	P	F	N	M	K	D	W	W	H	E	K	L	A	D	D	P	R
Template Known Secondary structure		S						G	G	G																							T	T				B			S	S	S			T	T	T	S		S		T	T												S	S			S				G	G	G	T	T		G	G
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
																						249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	F	A	V	V	D	R	N	L	K	P	E	G	I	F	L	L	H	T	I	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	T	I	N	T	N	K	R	I	L	T	P	P	T	G	N	A	N	F	A	W	M	L	H	M	L	Y	H	L	A	P	T	G	S	M	A	L	L	L	A	N
Template Known Secondary structure		G													T	T		T											T													T
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions