Job Description P0A9H7 Confidence 99.32% Date Wed Jan 25 15:20:19 GMT 2012 Rank 239 Aligned Residues 130 % Identity 23% Template c2q41D_ PDB info PDB header:transferase Chain: D: PDB Molecule:spermidine synthase 1; PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820 Resolution 2.70 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		R	M	L	D	P	F	M	Q	Y	S	C	A	Y	W	K	D	A	D	N	L	E	S	A	Q	Q	A	K	L	K	M	I	C	E	K	L	Q	L	K	P	G	M	R	V	L	D	I	G	C	G	W	G	G	L	A	H	Y	M	A	S	N	Y	D	V	.	S	V	V	G	V	T	I	S	A	E	Q	Q	K	M	A	Q
Query Conservation																																																																	.
Alig confidence												.	.	.	.	.	.	.																							.																								.
Template Conservation												.	.	.	.	.	.	.																							.
Template Sequence		L	V	L	D	G	V	I	Q	L	T	.	.	.	.	.	.	.	E	R	D	E	C	A	Y	Q	E	X	I	T	H	L	P	L	C	S	I	P	N	P	.	K	K	V	L	V	I	G	G	G	D	G	G	V	L	R	E	V	A	R	H	A	S	I	E	Q	I	D	X	C	E	I	D	K	X	V	V	D	V	S	K
Template Known Secondary structure					T	T						.	.	.	.	.	.	.	S	T	T									T					T	T	S	S	S		.							S		S	S	S							T	T		T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.																							.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.								100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		208	.	210	.	.								.	.	.	.	.	.	.	220	.	.	.	.	.						.	.	.	.	230	.	.	.	.						.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.														.	.	.	.	.										.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.														.	.	.	.	.										.	.	.	.	.
Query Sequence		E	R	C	E	G	.	.	.	.	.	.	.	L	D	V	T	I	L	L	Q	D	Y	R	D	L	.	.	.	.	.	N	D	Q	F	D	R	I	V	S	.	.	.	.	.	V	G	M	F	E	H	V	G	P	K	N	Y	D	T	Y	F	A	V	V	D	R	N	L	K	P	E	G	I	F	L	L	H	T	I	G
Query Conservation							.	.	.	.	.	.	.														.	.	.	.	.										.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.														.	.	.	.	.										.	.	.	.	.										.	.	.
Template Conservation																																																							.	.	.
Template Sequence		Q	F	F	P	D	V	A	I	G	Y	E	D	P	R	V	N	L	V	I	G	D	G	V	A	F	L	K	N	A	A	E	G	S	Y	D	A	V	I	V	D	S	S	D	P	I	G	P	A	K	E	L	F	E	.	.	.	K	P	F	F	Q	S	V	A	R	A	L	R	P	G	G	V	V	C	T	Q	A	E	S
Template Known Secondary structure					T	T	T	G	G	G	T	T		T	T						S								S	S		S	S												S	S	S	G	G	G	G	G	G	S	.	.	.
Template Predicted Secondary structure																																																							.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions