Job Description P0A9H7 Confidence 99.77% Date Wed Jan 25 15:20:19 GMT 2012 Rank 96 Aligned Residues 174 % Identity 18% Template c2pjdA_ PDB info PDB header:transferase Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase c; PDBTitle: crystal structure of 16s rrna methyltransferase rsmc Resolution 2.10 Å

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		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.									.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.
Query Sequence		H	H	F	K	D	T	L	R	I	A	G	A	R	L	F	N	L	Q	S	K	K	R	A	W	I	V	G	K	E	H	Y	D	L	G	N	D	L	F	S	R	M	L	D	P	F	M	Q	Y	S	C	A	Y	W	K	.	.	.	.	.	.	.	.	D	A	D	N	L	E	S	A	Q	Q	A	K	L	K	M	I	C	E
Query Conservation																																																								.	.	.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation																																																																								.	.	.	.
Template Sequence		R	S	G	V	R	S	A	E	Q	X	L	A	D	Y	A	P	L	N	K	V	D	S	A	R	R	C	G	L	Y	F	G	R	L	E	K	Q	P	V	F	D	A	E	K	F	W	G	E	Y	S	V	D	G	L	T	V	K	T	L	P	G	V	F	S	R	D	G	L	D	V	G	.	.	.	.	S	Q	L	L	L	S
Template Known Secondary structure		G	G	T	G	G	G						T	T	T	S									T	T										S						G	G	G	G							T	T							T	T		T	T	S	S	S					.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.					.	.	.	.	.	190
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																														.																										.	.													.
Query SS confidence																														.																										.	.													.
Query Sequence		K	L	Q	L	K	P	G	M	R	V	L	D	I	G	C	G	W	G	G	L	A	H	Y	M	A	S	N	Y	.	D	V	S	V	V	G	V	T	I	S	A	E	Q	Q	K	M	A	Q	E	R	C	E	G	L	D	.	.	V	T	I	L	L	Q	D	Y	R	D	L	N	.	D	Q	F	D	R	I	V	S	V	G	M
Query Conservation																														.																										.	.													.
Alig confidence																														.																										.	.													.
Template Conservation
Template Sequence		T	L	T	P	H	T	K	G	K	V	L	D	V	G	C	G	A	G	V	L	S	V	A	F	A	R	H	S	P	K	I	R	L	T	L	C	D	V	S	A	P	A	V	E	A	S	R	A	T	L	A	A	N	G	V	E	G	E	V	F	A	S	N	V	F	S	E	V	K	G	R	F	D	X	I	I	S	N	P	P
Template Known Secondary structure			S		T	T			S	B			B	T	T		T	T	S											T	T		B						S	B														T	T									S	T	T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		238	.				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		F	E	.	.	.	H	V	G	P	K	N	Y	D	T	Y	F	A	V	V	D	R	N	L	K	P	E	G	I	F	L	L	H	T
Query Conservation				.	.	.
Alig confidence				.	.	.
Template Conservation
Template Sequence		F	H	D	G	M	Q	T	S	L	D	A	A	Q	T	L	I	R	G	A	V	R	H	L	N	S	G	G	E	L	R	I	V	A
Template Known Secondary structure				S	S	S															G	G	G
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions