Job Description P0A9H7 Confidence 99.26% Date Wed Jan 25 15:20:19 GMT 2012 Rank 243 Aligned Residues 110 % Identity 18% Template c2cmgA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of spermidine synthase from helicobacter2 pylori Resolution 2.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.
Query SS confidence																																																																				.	.	.
Query Sequence		E	S	A	Q	Q	A	K	L	K	M	I	C	E	K	L	Q	L	K	P	G	M	R	V	L	D	I	G	C	G	W	G	G	L	A	H	Y	M	A	S	N	Y	D	V	S	V	V	G	V	T	I	S	A	E	Q	Q	K	M	A	Q	E	R	C	E	G	L	D	.	.	.	V	T	I	L	L	Q	D	Y	R	D	L
Query Conservation																																																																				.	.	.
Alig confidence																					.																			.																												.	.	.
Template Conservation																					.																			.
Template Sequence		L	H	I	E	S	E	L	L	A	H	M	G	G	C	T	K	K	E	L	.	K	E	V	L	I	V	D	G	F	D	L	E	L	A	H	Q	L	F	.	K	Y	D	T	H	I	D	F	V	Q	A	D	E	K	I	L	D	S	F	I	S	F	F	P	H	F	H	E	V	K	N	N	K	N	F	T	H	A	K	Q	L
Template Known Secondary structure		T													T	T	S	S			.							S	S										T	.	T	S	S								S						G	G	G	T	T	T	S	T	T						T		T	T					S	S	G
Template Predicted Secondary structure																					.																			.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
						226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	N	D	Q	F	D	R	I	V	S	V	G	M	F	E	H	V	G	P	K	N	Y	D	T	Y	F	A	V	V	D	R	N	L	K	P	E	G	I	F	L	L	H	T
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.										.	.	.	.	.						.	.
Template Conservation															.	.	.	.	.						.	.
Template Sequence		L	D	L	D	I	K	K	Y	D	L	I	F	C	.	.	.	.	.	L	Q	E	P	D	.	.	I	H	R	I	D	G	L	K	R	M	L	K	E	D	G	V	F	I	S	V	A
Template Known Secondary structure		G	G	S											.	.	.	.	.	S	S				.	.									T	T
Template Predicted Secondary structure															.	.	.	.	.						.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions