Job Description P42904 Confidence 19.37% Date Thu Jan 5 12:02:02 GMT 2012 Rank 38 Aligned Residues 81 % Identity 11% Template c3q41B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1; PDBTitle: crystal structure of the glun1 n-terminal domain (ntd) Resolution 3.40 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.						.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																						.																												.	.	.	.	.														.
Query SS confidence																						.																												.	.	.	.	.														.
Query Sequence		H	G	Q	V	G	V	Q	W	V	G	F	A	G	A	N	L	V	L	V	A	.	N	D	E	V	A	E	D	P	V	Q	Q	N	L	M	E	M	V	L	A	E	G	I	A	V	R	F	W	.	.	.	.	.	T	L	Q	K	V	I	D	N	I	H	R	A	A	.	D	R	Q	K	I	L	L	V	C	K	T	P	A
Query Conservation																						.																												.	.	.	.	.														.
Alig confidence																						.																												.	.	.	.	.														.
Template Conservation
Template Sequence		Q	S	S	V	W	F	E	M	M	R	V	Y	N	W	N	H	I	I	L	L	V	S	D	D	H	E	G	R	A	A	Q	K	R	L	E	T	L	L	E	E	R	E	S	K	A	E	K	V	L	Q	F	D	P	G	T	K	N	V	T	A	L	L	M	E	A	R	E	L	E	A	R	V	I	I	L	S	A	S	E	D
Template Known Secondary structure													B											S	S															T	T	S	S											T	T		S											T	S	S
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		88	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	L	T	L	V	K	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	A	T	V	Y	R	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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