Return to main results Retrieve Phyre Job Id

Job DescriptionP56259
Confidence99.62%DateThu Jan 5 12:06:21 GMT 2012
Rank1Aligned Residues111
% Identity16%Templated1ne8a_
SCOP infoSH3-like barrel Cell growth inhibitor/plasmid maintenance toxic component Kid/PemK
Resolution2.10

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50.... .....60.........70.........80...
Predicted Secondary structure 































...
















Query SS confidence 















































. . .




























Query Sequence  PKVGEILECNFGNYPVSQNGPFSTTYYDGRIPPEMIKNRLVVVLNGKI. . . NGNACIVVPLSTTRDQDKLKRGMHVEIAS
Query Conservation 

 
 

 


            
    
 
 


 
 






 
 ... 
 









 
 
      
  
  
Alig confidence 










................




















...




























Template Conservation   




  
  ................    
 
  
 

 



          
 
 



                 
Template Sequence  VKRGDVYFADL. . . . . . . . . . . . . . . . SPVVGSEQGGVRPVLVIQNDIGNRFSPTAIVAAITAQIQKAKLPTHVEIDAKR
Template Known Secondary structure 

TT
................
S

TTS

S
S

SSS
SS
SSTT
Template Predicted Secondary structure 




................


































Template SS confidence 















































































   3......10... ......20.........30.........40.........50.........60......
 
   84.....90.........100.........110.........120.........130.........140.......
Predicted Secondary structure 
























Query SS confidence 































































Query Sequence  NVINDLQFFDQQIRWAKADLVQQVSRNRLNRARTYRGYLNQCLPHELVADIQRAVIKSINAISL
Query Conservation     
          






 


  



 
  
 
            
   
   
     
Alig confidence 






.......

















.......
























Template Conservation   

   
....... 
   

 

   

   ....... 
 
    
  
   
   


   
Template Sequence  YGFERDS. . . . . . . VILLEQIRTIDKQRLTDK. . . . . . . ITHLDDEMMDKVDEALQISLALIDF
Template Known Secondary structure  T
SS
.......GGG.......

TT



Template Predicted Secondary structure 





.......
.......









Template SS confidence 































































   67..70... ......80.........90. ........100.........110......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions