Job Description P56259 Confidence 10.36% Date Thu Jan 5 12:06:21 GMT 2012 Rank 22 Aligned Residues 97 % Identity 14% Template c1kjwA_ PDB info PDB header:neuropeptide Chain: A: PDB Molecule:postsynaptic density protein 95; PDBTitle: sh3-guanylate kinase module from psd-95 Resolution 1.80 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.												.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.					.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.																				.	.										.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.																				.	.										.	.	.	.
Query Sequence		K	N	R	L	V	V	V	L	N	G	K	I	N	G	.	.	.	.	.	.	.	.	.	.	.	N	A	C	I	V	V	P	L	S	T	T	R	D	Q	D	K	L	K	R	.	.	G	M	H	V	E	I	A	S	N	.	.	.	.	V	I	N	D	L	Q	F	F	D	Q	Q	I	R	W	A	K	A	D	L	V	Q
Query Conservation																.	.	.	.	.	.	.	.	.	.	.																				.	.										.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.																				.	.										.	.	.	.											.	.	.
Template Conservation																																																																							.	.	.
Template Sequence		Y	A	R	P	I	I	I	L	G	P	T	K	D	R	A	N	D	D	L	L	S	E	F	P	D	K	F	G	S	C	V	P	H	T	T	R	P	K	R	E	Y	E	I	D	G	R	D	Y	H	F	V	S	S	R	E	K	M	E	K	D	I	Q	A	H	K	F	I	E	A	.	.	.	G	Q	Y	N	S	H	L	Y
Template Known Secondary structure		S								S	T	T													T	T	T										S				T	T			B	T	T	T	B				S											T	T						.	.	.				T	T
Template Predicted Secondary structure																																																																							.	.	.
Template SS confidence
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.				.	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	S	R	N	R	L	N	R	A	R	T	Y	R	G	Y	L	N	Q	C	L	P	H	E	L	V	A	D	I	Q	R	A	V	I	K	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	T	S	V	Q	S	V	R	E	V	A	E	Q	G	K	H	C	I	L	D	V	S	A	N	A	V	R	R	L	Q	A	A	H	L	H	P	I
Template Known Secondary structure														T	T									T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions