Job Description P0A908 Confidence 11.13% Date Thu Jan 5 11:09:06 GMT 2012 Rank 41 Aligned Residues 173 % Identity 14% Template d2vdfa1 SCOP info Transmembrane beta-barrels OMPT-like Outer membrane adhesin/invasin OpcA Resolution 1.95

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90												.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.								.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Query Sequence		L	G	G	G	Y	Y	L	W	N	D	A	T	D	K	L	S	I	T	A	Y	W	S	P	L	Y	F	K	.	.	.	.	.	.	.	.	.	.	.	A	K	D	S	G	D	H	Q	M	R	H	L	D	D	R	K	S	T	M	M	A	G	L	S	Y	A	H	F	T	Q	Y	.	.	.	.	.	.	.	G	Y	L	R
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	G	V	R	A	D	I	P	F	D	A	N	Q	G	I	R	L	E	A	G	F	G	R	S	K	K	N	I	I	N	L	E	T	D	E	N	K	L	G	K	T	K	N	V	K	L	P	T	G	V	P	E	N	R	I	D	L	Y	T	G	Y	T	Y	T	Q	T	L	S	D	S	L	N	F	R	V	G	A	G	L	G
Template Known Secondary structure										S	S	S	S																										T	S	S									S																				T	T
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure													.	.																	.
Query SS confidence													.	.																	.
Query Sequence		T	T	L	A	G	D	T	L	D	N	S	.	.	N	G	I	V	W	D	M	A	W	L	Y	R	Y	T	N	G	.	G	L	T	V	T	P	G	I	G	V	Q	W	N	S	E	N	Q	N	E	Y	Y	Y	G	V	S	R	K	E	S	A	R	S	G	L	R	G	Y	N	P	N	D	S	W	S	P	Y	L	E	L	S
Query Conservation													.	.																	.
Alig confidence													.	.																	.																		.	.							.	.	.	.	.	.	.	.	.						.
Template Conservation																																																	.	.							.	.	.	.	.	.	.	.	.						.
Template Sequence		F	E	S	S	K	D	S	I	L	H	S	S	R	Q	S	W	L	A	K	V	H	A	D	L	L	S	Q	L	G	N	G	W	Y	I	N	P	W	S	E	V	K	F	D	L	N	S	R	.	.	Y	K	L	N	T	D	.	.	.	.	.	.	.	.	.	I	N	Q	K	T	.	N	G	W	G	F	G	L	G	A	N
Template Known Secondary structure																															T	T																	.	.							.	.	.	.	.	.	.	.	.						.
Template Predicted Secondary structure																																																	.	.							.	.	.	.	.	.	.	.	.						.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.										.	170	.	.	.		.	.	.	.	.	.	180	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		A	S	Y	N	F	L	G	D	W	S	V	Y	G	T	A	R	Y	T	R	L	S	.	.	D	E	V	T	D	S	P	M	V	D	K	S	W	T	G	L	I	S	T	G	I	T	Y	K	F
Query Conservation																							.	.
Alig confidence																							.	.
Template Conservation
Template Sequence		I	G	K	K	L	G	A	S	I	E	A	G	P	F	Y	K	Q	R	T	Y	K	E	S	G	E	F	S	V	S	L	T	I	P	K	T	S	I	R	E	Y	G	L	R	V	G	I	K	F
Template Known Secondary structure																											B				B
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions